Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3084 and DvMF_3085 are separated by 19 nucleotides DvMF_3085 and DvMF_3086 are separated by 146 nucleotides DvMF_3086 and DvMF_3087 overlap by 4 nucleotides DvMF_3087 and DvMF_3088 are separated by 3 nucleotides
DvMF_3084: DvMF_3084 - ATP-dependent protease La (RefSeq), at 3,895,393 to 3,898,089
_3084
DvMF_3085: DvMF_3085 - acylphosphatase (RefSeq), at 3,898,109 to 3,898,447
_3085
DvMF_3086: DvMF_3086 - DNA repair protein RadC (RefSeq), at 3,898,594 to 3,899,271
_3086
DvMF_3087: DvMF_3087 - hypothetical protein (RefSeq), at 3,899,268 to 3,899,411
_3087
DvMF_3088: DvMF_3088 - hypothetical protein (RefSeq), at 3,899,415 to 3,900,566
_3088
Position (kb)
3898
3899 Strain fitness (log2 ratio)
-1
0
1 at 3898.366 kb on + strand, within DvMF_3085 at 3898.818 kb on - strand, within DvMF_3086 at 3898.889 kb on + strand, within DvMF_3086 at 3898.957 kb on + strand, within DvMF_3086 at 3898.957 kb on + strand, within DvMF_3086 at 3898.965 kb on - strand, within DvMF_3086 at 3899.043 kb on + strand, within DvMF_3086 at 3899.244 kb on + strand at 3899.341 kb on - strand, within DvMF_3087 at 3899.389 kb on - strand, within DvMF_3087
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,898,366 + DvMF_3085 0.76 -1.4 3,898,818 - DvMF_3086 0.33 -1.0 3,898,889 + DvMF_3086 0.44 -0.3 3,898,957 + DvMF_3086 0.54 -0.4 3,898,957 + DvMF_3086 0.54 -0.8 3,898,965 - DvMF_3086 0.55 -0.5 3,899,043 + DvMF_3086 0.66 -0.3 3,899,244 + -0.3 3,899,341 - DvMF_3087 0.51 -0.3 3,899,389 - DvMF_3087 0.84 -0.4
Or see this region's nucleotide sequence