Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2603 and DvMF_2604 are separated by 24 nucleotides DvMF_2604 and DvMF_2605 are separated by 156 nucleotides DvMF_2605 and DvMF_2606 are separated by 513 nucleotides
DvMF_2603: DvMF_2603 - hypothetical protein (RefSeq), at 3,290,980 to 3,292,089
_2603
DvMF_2604: DvMF_2604 - hypothetical protein (RefSeq), at 3,292,114 to 3,292,509
_2604
DvMF_2605: DvMF_2605 - UspA domain protein (RefSeq), at 3,292,666 to 3,293,109
_2605
DvMF_2606: DvMF_2606 - large conductance mechanosensitive channel protein (RefSeq), at 3,293,623 to 3,294,069
_2606
Position (kb)
3292
3293
3294 Strain fitness (log2 ratio)
-1
0
1 at 3292.185 kb on - strand, within DvMF_2604 at 3292.280 kb on - strand, within DvMF_2604 at 3292.456 kb on - strand, within DvMF_2604 at 3292.460 kb on - strand, within DvMF_2604 at 3292.494 kb on + strand at 3292.580 kb on - strand at 3292.761 kb on - strand, within DvMF_2605 at 3292.866 kb on + strand, within DvMF_2605 at 3293.024 kb on + strand, within DvMF_2605 at 3293.071 kb on - strand at 3293.427 kb on + strand at 3293.427 kb on + strand at 3293.435 kb on - strand at 3293.484 kb on + strand at 3293.489 kb on + strand at 3293.784 kb on - strand, within DvMF_2606 at 3293.931 kb on + strand, within DvMF_2606 at 3294.017 kb on + strand, within DvMF_2606
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,292,185 - DvMF_2604 0.18 -0.4 3,292,280 - DvMF_2604 0.42 -0.4 3,292,456 - DvMF_2604 0.86 -0.7 3,292,460 - DvMF_2604 0.87 -0.0 3,292,494 + -0.9 3,292,580 - -1.3 3,292,761 - DvMF_2605 0.21 -0.5 3,292,866 + DvMF_2605 0.45 -1.0 3,293,024 + DvMF_2605 0.81 -1.7 3,293,071 - -0.3 3,293,427 + -0.6 3,293,427 + -1.1 3,293,435 - -0.3 3,293,484 + +0.3 3,293,489 + +0.4 3,293,784 - DvMF_2606 0.36 +0.2 3,293,931 + DvMF_2606 0.69 -0.2 3,294,017 + DvMF_2606 0.88 -0.5
Or see this region's nucleotide sequence