Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2238

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2237 and DvMF_2238 are separated by 209 nucleotidesDvMF_2238 and DvMF_2239 are separated by 28 nucleotides DvMF_2237: DvMF_2237 - tryptophan synthase subunit beta (RefSeq), at 2,800,110 to 2,801,432 _2237 DvMF_2238: DvMF_2238 - Tir chaperone family protein (RefSeq), at 2,801,642 to 2,802,142 _2238 DvMF_2239: DvMF_2239 - hypothetical protein (RefSeq), at 2,802,171 to 2,805,872 _2239 Position (kb) 2801 2802 2803Strain fitness (log2 ratio) -2 -1 0 1at 2801.023 kb on - strand, within DvMF_2237at 2801.042 kb on + strand, within DvMF_2237at 2801.061 kb on - strand, within DvMF_2237at 2801.141 kb on + strand, within DvMF_2237at 2801.144 kb on - strand, within DvMF_2237at 2801.204 kb on - strand, within DvMF_2237at 2801.409 kb on - strandat 2801.478 kb on + strandat 2801.496 kb on - strandat 2801.921 kb on + strand, within DvMF_2238at 2801.986 kb on - strand, within DvMF_2238at 2802.012 kb on + strand, within DvMF_2238at 2802.028 kb on + strand, within DvMF_2238at 2802.061 kb on - strand, within DvMF_2238at 2802.076 kb on + strand, within DvMF_2238at 2802.076 kb on - strand, within DvMF_2238at 2802.107 kb on + strandat 2802.271 kb on - strandat 2802.304 kb on + strandat 2802.367 kb on + strandat 2802.597 kb on - strand, within DvMF_2239at 2802.617 kb on + strand, within DvMF_2239at 2802.617 kb on + strand, within DvMF_2239at 2802.642 kb on + strand, within DvMF_2239at 2802.798 kb on - strand, within DvMF_2239at 2802.854 kb on + strand, within DvMF_2239at 2802.864 kb on + strand, within DvMF_2239at 2803.041 kb on - strand, within DvMF_2239at 2803.044 kb on + strand, within DvMF_2239

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,801,023 - DvMF_2237 0.69 +0.4
2,801,042 + DvMF_2237 0.70 -1.4
2,801,061 - DvMF_2237 0.72 -0.7
2,801,141 + DvMF_2237 0.78 -0.7
2,801,144 - DvMF_2237 0.78 -0.6
2,801,204 - DvMF_2237 0.83 -0.3
2,801,409 - -0.5
2,801,478 + -0.4
2,801,496 - -0.3
2,801,921 + DvMF_2238 0.56 -0.6
2,801,986 - DvMF_2238 0.69 -0.4
2,802,012 + DvMF_2238 0.74 -1.9
2,802,028 + DvMF_2238 0.77 -0.5
2,802,061 - DvMF_2238 0.84 -0.5
2,802,076 + DvMF_2238 0.87 -0.7
2,802,076 - DvMF_2238 0.87 -1.5
2,802,107 + -0.4
2,802,271 - -0.3
2,802,304 + +0.2
2,802,367 + -0.6
2,802,597 - DvMF_2239 0.12 -0.5
2,802,617 + DvMF_2239 0.12 +0.1
2,802,617 + DvMF_2239 0.12 +0.3
2,802,642 + DvMF_2239 0.13 -0.6
2,802,798 - DvMF_2239 0.17 -0.5
2,802,854 + DvMF_2239 0.18 -1.2
2,802,864 + DvMF_2239 0.19 -0.0
2,803,041 - DvMF_2239 0.24 -0.5
2,803,044 + DvMF_2239 0.24 -0.5

Or see this region's nucleotide sequence