Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1995

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1994 and DvMF_1995 are separated by 139 nucleotidesDvMF_1995 and DvMF_1996 are separated by 303 nucleotides DvMF_1994: DvMF_1994 - transcriptional regulator, GntR family (RefSeq), at 2,471,444 to 2,472,175 _1994 DvMF_1995: DvMF_1995 - Malate/L-lactate dehydrogenase (RefSeq), at 2,472,315 to 2,473,385 _1995 DvMF_1996: DvMF_1996 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,473,689 to 2,475,722 _1996 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -1 0 1at 2471.351 kb on + strandat 2471.359 kb on - strandat 2472.295 kb on + strandat 2472.324 kb on + strandat 2472.448 kb on + strand, within DvMF_1995at 2472.448 kb on + strand, within DvMF_1995at 2472.448 kb on + strand, within DvMF_1995at 2472.675 kb on - strand, within DvMF_1995at 2472.799 kb on + strand, within DvMF_1995at 2472.822 kb on - strand, within DvMF_1995at 2473.094 kb on + strand, within DvMF_1995at 2473.263 kb on + strand, within DvMF_1995at 2473.263 kb on - strand, within DvMF_1995at 2473.374 kb on - strandat 2473.531 kb on - strandat 2473.609 kb on + strandat 2473.617 kb on - strandat 2473.870 kb on + strandat 2474.292 kb on + strand, within DvMF_1996at 2474.380 kb on - strand, within DvMF_1996

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,471,351 + +0.2
2,471,359 - -0.5
2,472,295 + -0.4
2,472,324 + -0.5
2,472,448 + DvMF_1995 0.12 -0.3
2,472,448 + DvMF_1995 0.12 -0.3
2,472,448 + DvMF_1995 0.12 -0.8
2,472,675 - DvMF_1995 0.34 -0.3
2,472,799 + DvMF_1995 0.45 -0.6
2,472,822 - DvMF_1995 0.47 -0.8
2,473,094 + DvMF_1995 0.73 +0.0
2,473,263 + DvMF_1995 0.89 -1.0
2,473,263 - DvMF_1995 0.89 -0.3
2,473,374 - +0.1
2,473,531 - -0.3
2,473,609 + -0.3
2,473,617 - -0.3
2,473,870 + -1.0
2,474,292 + DvMF_1996 0.30 -0.4
2,474,380 - DvMF_1996 0.34 -0.9

Or see this region's nucleotide sequence