Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1489 and DvMF_1490 are separated by 578 nucleotides DvMF_1490 and DvMF_1491 are separated by 4 nucleotides DvMF_1491 and DvMF_1492 are separated by 325 nucleotides
DvMF_1489: DvMF_1489 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,826,834 to 1,827,526
_1489
DvMF_1490: DvMF_1490 - Nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 1,828,105 to 1,829,694
_1490
DvMF_1491: DvMF_1491 - cytochrome c nitrite reductase small subunit (RefSeq), at 1,829,699 to 1,830,178
_1491
DvMF_1492: DvMF_1492 - multi-sensor hybrid histidine kinase (RefSeq), at 1,830,504 to 1,833,593
_1492
Position (kb)
1828
1829
1830 Strain fitness (log2 ratio)
-2
-1
0
1 at 1827.313 kb on - strand, within DvMF_1489 at 1827.417 kb on + strand, within DvMF_1489 at 1827.758 kb on + strand at 1827.771 kb on + strand at 1827.857 kb on - strand at 1828.221 kb on - strand at 1828.573 kb on - strand, within DvMF_1490 at 1828.708 kb on + strand, within DvMF_1490 at 1828.820 kb on + strand, within DvMF_1490 at 1828.820 kb on + strand, within DvMF_1490 at 1828.861 kb on - strand, within DvMF_1490 at 1828.885 kb on - strand, within DvMF_1490 at 1828.919 kb on + strand, within DvMF_1490 at 1828.927 kb on - strand, within DvMF_1490 at 1829.044 kb on - strand, within DvMF_1490 at 1829.044 kb on - strand, within DvMF_1490 at 1829.088 kb on + strand, within DvMF_1490 at 1829.309 kb on + strand, within DvMF_1490 at 1829.643 kb on - strand at 1829.886 kb on + strand, within DvMF_1491 at 1829.896 kb on + strand, within DvMF_1491 at 1829.921 kb on - strand, within DvMF_1491 at 1830.007 kb on - strand, within DvMF_1491 at 1830.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,827,313 - DvMF_1489 0.69 -0.3 1,827,417 + DvMF_1489 0.84 -0.9 1,827,758 + -0.6 1,827,771 + -0.4 1,827,857 - -0.4 1,828,221 - -0.5 1,828,573 - DvMF_1490 0.29 -0.5 1,828,708 + DvMF_1490 0.38 -0.4 1,828,820 + DvMF_1490 0.45 -0.5 1,828,820 + DvMF_1490 0.45 -0.5 1,828,861 - DvMF_1490 0.48 -0.7 1,828,885 - DvMF_1490 0.49 -0.3 1,828,919 + DvMF_1490 0.51 -0.4 1,828,927 - DvMF_1490 0.52 -1.5 1,829,044 - DvMF_1490 0.59 -0.2 1,829,044 - DvMF_1490 0.59 -0.5 1,829,088 + DvMF_1490 0.62 -0.2 1,829,309 + DvMF_1490 0.76 -0.3 1,829,643 - -0.4 1,829,886 + DvMF_1491 0.39 -1.0 1,829,896 + DvMF_1491 0.41 -1.9 1,829,921 - DvMF_1491 0.46 -0.8 1,830,007 - DvMF_1491 0.64 -0.1 1,830,490 + -0.5
Or see this region's nucleotide sequence