Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0221

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0220 and DvMF_0221 are separated by 66 nucleotidesDvMF_0221 and DvMF_0222 are separated by 155 nucleotides DvMF_0220: DvMF_0220 - hypothetical protein (RefSeq), at 246,533 to 247,135 _0220 DvMF_0221: DvMF_0221 - OmpA/MotB domain protein (RefSeq), at 247,202 to 248,239 _0221 DvMF_0222: DvMF_0222 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 248,395 to 249,816 _0222 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1at 246.450 kb on - strandat 246.709 kb on + strand, within DvMF_0220at 246.873 kb on - strand, within DvMF_0220at 247.439 kb on - strand, within DvMF_0221at 248.075 kb on - strand, within DvMF_0221at 248.107 kb on + strand, within DvMF_0221at 248.404 kb on + strandat 248.557 kb on + strand, within DvMF_0222at 248.844 kb on - strand, within DvMF_0222at 248.908 kb on - strand, within DvMF_0222at 248.924 kb on - strand, within DvMF_0222at 248.931 kb on + strand, within DvMF_0222at 248.931 kb on + strand, within DvMF_0222at 248.933 kb on + strand, within DvMF_0222at 248.941 kb on - strand, within DvMF_0222at 248.946 kb on + strand, within DvMF_0222at 249.031 kb on + strand, within DvMF_0222at 249.115 kb on - strand, within DvMF_0222

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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246,450 - +0.9
246,709 + DvMF_0220 0.29 -1.1
246,873 - DvMF_0220 0.56 -2.9
247,439 - DvMF_0221 0.23 +0.0
248,075 - DvMF_0221 0.84 -1.7
248,107 + DvMF_0221 0.87 -2.9
248,404 + -0.7
248,557 + DvMF_0222 0.11 -1.3
248,844 - DvMF_0222 0.32 +1.4
248,908 - DvMF_0222 0.36 -0.9
248,924 - DvMF_0222 0.37 -1.1
248,931 + DvMF_0222 0.38 -1.5
248,931 + DvMF_0222 0.38 -0.3
248,933 + DvMF_0222 0.38 -0.3
248,941 - DvMF_0222 0.38 +0.1
248,946 + DvMF_0222 0.39 -0.8
249,031 + DvMF_0222 0.45 -0.8
249,115 - DvMF_0222 0.51 -0.4

Or see this region's nucleotide sequence