Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0029 and DvMF_0030 are separated by 756 nucleotides DvMF_0030 and DvMF_0031 are separated by 298 nucleotides DvMF_0031 and DvMF_0032 are separated by 276 nucleotides
DvMF_0029: DvMF_0029 - hypothetical protein (RefSeq), at 37,215 to 37,841
_0029
DvMF_0030: DvMF_0030 - hypothetical protein (RefSeq), at 38,598 to 38,939
_0030
DvMF_0031: DvMF_0031 - hypothetical protein (RefSeq), at 39,238 to 39,513
_0031
DvMF_0032: DvMF_0032 - diguanylate cyclase (RefSeq), at 39,790 to 41,526
_0032
Position (kb) 38
39 Strain fitness (log2 ratio) -1
0
1 at 37.843 kb on + strand at 37.977 kb on - strand at 37.997 kb on + strand at 38.069 kb on + strand at 38.140 kb on - strand at 38.251 kb on + strand at 38.371 kb on + strand at 38.400 kb on + strand at 38.469 kb on - strand at 38.482 kb on - strand at 38.558 kb on - strand at 38.569 kb on - strand at 38.663 kb on + strand, within DvMF_0030 at 38.703 kb on + strand, within DvMF_0030 at 38.788 kb on - strand, within DvMF_0030 at 38.913 kb on - strand at 38.931 kb on + strand at 38.996 kb on - strand at 39.227 kb on - strand at 39.295 kb on + strand, within DvMF_0031 at 39.303 kb on - strand, within DvMF_0031 at 39.765 kb on + strand at 39.774 kb on + strand at 39.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 37,843 + +0.0 37,977 - +0.1 37,997 + +1.4 38,069 + +0.6 38,140 - -0.5 38,251 + +0.0 38,371 + -0.6 38,400 + -0.9 38,469 - +0.1 38,482 - -0.4 38,558 - -0.5 38,569 - -0.4 38,663 + DvMF_0030 0.19 -0.5 38,703 + DvMF_0030 0.31 +0.7 38,788 - DvMF_0030 0.56 +0.5 38,913 - -0.4 38,931 + +0.0 38,996 - -1.1 39,227 - -0.5 39,295 + DvMF_0031 0.21 -0.6 39,303 - DvMF_0031 0.24 +0.3 39,765 + +0.7 39,774 + +0.2 39,798 + -0.6
Or see this region's nucleotide sequence