Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around Dv16SE

Experiment: MoLS4 with L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrrl and tRNA-Ala are separated by 152 nucleotidestRNA-Ala and tRNA-Ile are separated by 22 nucleotidestRNA-Ile and rrsE are separated by 73 nucleotidesrrsE and DVU3106 are separated by 511 nucleotides Dv23SE: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 3,247,287 to 3,250,207 rrl DVU_tRNA-Ala-8: tRNA-Ala - tRNA with anticodon TGC for Ala (VIMSS-AUTO), at 3,250,360 to 3,250,435 tRNA-Ala DVU_tRNA-Ile-5: tRNA-Ile - tRNA with anticodon GAT for Ile (VIMSS-AUTO), at 3,250,458 to 3,250,534 tRNA-Ile Dv16SE: rrsE - 16S ribosomal RNA (RefSeq), at 3,250,608 to 3,252,148 rrsE DVU3106: DVU3106 - GGDEF domain protein (TIGR), at 3,252,660 to 3,254,552 DVU3106 Position (kb) 3250 3251 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3252.510 kb on - strandat 3252.589 kb on + strandat 3252.628 kb on + strandat 3252.628 kb on + strandat 3252.656 kb on + strandat 3252.682 kb on + strandat 3252.745 kb on + strandat 3252.747 kb on - strandat 3252.747 kb on - strandat 3252.753 kb on - strandat 3252.785 kb on - strandat 3252.787 kb on + strandat 3252.792 kb on + strandat 3252.800 kb on - strandat 3252.828 kb on - strandat 3252.907 kb on + strand, within DVU3106at 3252.919 kb on + strand, within DVU3106at 3252.929 kb on + strand, within DVU3106at 3253.047 kb on + strand, within DVU3106at 3253.089 kb on + strand, within DVU3106

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N)
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3,252,510 - -0.3
3,252,589 + -0.1
3,252,628 + +2.2
3,252,628 + -0.6
3,252,656 + -0.9
3,252,682 + +0.8
3,252,745 + -0.5
3,252,747 - +0.9
3,252,747 - +3.3
3,252,753 - -0.3
3,252,785 - -1.2
3,252,787 + -0.1
3,252,792 + -0.5
3,252,800 - +2.1
3,252,828 - -0.3
3,252,907 + DVU3106 0.13 -1.2
3,252,919 + DVU3106 0.14 -2.5
3,252,929 + DVU3106 0.14 -0.1
3,253,047 + DVU3106 0.20 +3.4
3,253,089 + DVU3106 0.23 -1.5

Or see this region's nucleotide sequence