Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0634

Experiment: MoLS4 with L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0633 and DVU0634 are separated by 11 nucleotidesDVU0634 and DVU0635 are separated by 14 nucleotides DVU0633: DVU0633 - penicillin-binding protein (TIGR), at 699,680 to 702,103 DVU0633 DVU0634: DVU0634 - hypothetical protein (TIGR), at 702,115 to 702,681 DVU0634 DVU0635: DVU0635 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein (TIGR), at 702,696 to 704,282 DVU0635 Position (kb) 702 703Strain fitness (log2 ratio) -2 -1 0 1 2 3at 702.151 kb on + strandat 702.152 kb on + strandat 702.170 kb on + strandat 702.182 kb on + strand, within DVU0634at 702.188 kb on - strand, within DVU0634at 702.188 kb on - strand, within DVU0634at 702.313 kb on - strand, within DVU0634at 702.314 kb on + strand, within DVU0634at 702.327 kb on + strand, within DVU0634at 702.346 kb on + strand, within DVU0634at 702.353 kb on - strand, within DVU0634at 702.355 kb on - strand, within DVU0634at 702.362 kb on - strand, within DVU0634at 702.552 kb on - strand, within DVU0634at 702.571 kb on + strand, within DVU0634at 702.599 kb on + strand, within DVU0634at 702.662 kb on + strandat 702.701 kb on - strandat 703.084 kb on + strand, within DVU0635

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N)
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702,151 + +0.8
702,152 + -2.2
702,170 + -1.7
702,182 + DVU0634 0.12 +0.2
702,188 - DVU0634 0.13 -1.3
702,188 - DVU0634 0.13 -1.7
702,313 - DVU0634 0.35 +1.8
702,314 + DVU0634 0.35 +1.0
702,327 + DVU0634 0.37 -0.7
702,346 + DVU0634 0.41 +0.1
702,353 - DVU0634 0.42 +1.2
702,355 - DVU0634 0.42 -1.4
702,362 - DVU0634 0.44 -2.3
702,552 - DVU0634 0.77 +1.2
702,571 + DVU0634 0.80 -1.3
702,599 + DVU0634 0.85 -0.4
702,662 + -1.5
702,701 - -0.2
703,084 + DVU0635 0.24 +2.8

Or see this region's nucleotide sequence