Experiment: MoLS4 with L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF26446 and DVU0234 are separated by 787 nucleotides DVU0234 and DVU0235 are separated by 2 nucleotides DVU0235 and DORF26459 are separated by 97 nucleotides DORF26459 and DVU0236 overlap by 4 nucleotides
DORF26446: DORF26446 - no description, at 266,955 to 267,194
DORF26446
DVU0234: DVU0234 - hypothetical protein (TIGR), at 267,982 to 268,305
DVU0234
DVU0235: DVU0235 - hypothetical protein (TIGR), at 268,308 to 268,871
DVU0235
DORF26459: DORF26459 - no description, at 268,969 to 269,286
DORF26459
DVU0236: DVU0236 - site-specific recombinase, phage integrase family (TIGR), at 269,283 to 270,425
DVU0236
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 267.059 kb on + strand, within DORF26446 at 267.211 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.281 kb on + strand at 267.489 kb on + strand at 267.491 kb on + strand at 267.508 kb on - strand at 267.615 kb on + strand at 267.674 kb on - strand at 267.681 kb on + strand at 267.728 kb on - strand at 267.743 kb on - strand at 267.769 kb on - strand at 267.779 kb on - strand at 267.812 kb on - strand at 267.839 kb on - strand at 267.902 kb on - strand at 267.935 kb on + strand at 267.981 kb on - strand at 268.025 kb on - strand, within DVU0234 at 268.025 kb on - strand, within DVU0234 at 268.027 kb on + strand, within DVU0234 at 268.051 kb on + strand, within DVU0234 at 268.059 kb on - strand, within DVU0234 at 268.059 kb on - strand, within DVU0234 at 268.083 kb on + strand, within DVU0234 at 268.178 kb on - strand, within DVU0234 at 268.207 kb on - strand, within DVU0234 at 268.215 kb on + strand, within DVU0234 at 268.220 kb on + strand, within DVU0234 at 268.223 kb on - strand, within DVU0234 at 268.317 kb on - strand at 268.378 kb on - strand, within DVU0235 at 268.397 kb on - strand, within DVU0235 at 268.407 kb on - strand, within DVU0235 at 268.422 kb on + strand, within DVU0235 at 268.478 kb on + strand, within DVU0235 at 268.486 kb on - strand, within DVU0235 at 268.486 kb on - strand, within DVU0235 at 268.556 kb on - strand, within DVU0235 at 268.654 kb on - strand, within DVU0235 at 268.661 kb on + strand, within DVU0235 at 268.699 kb on + strand, within DVU0235 at 268.701 kb on + strand, within DVU0235 at 268.701 kb on + strand, within DVU0235 at 268.709 kb on - strand, within DVU0235 at 268.709 kb on - strand, within DVU0235 at 268.709 kb on - strand, within DVU0235 at 268.714 kb on - strand, within DVU0235 at 268.762 kb on + strand, within DVU0235 at 268.779 kb on + strand, within DVU0235 at 268.779 kb on + strand, within DVU0235 at 268.779 kb on + strand, within DVU0235 at 268.787 kb on - strand, within DVU0235 at 268.787 kb on - strand, within DVU0235 at 268.793 kb on + strand, within DVU0235 at 268.803 kb on + strand, within DVU0235 at 268.822 kb on - strand at 268.872 kb on + strand at 268.898 kb on + strand at 268.930 kb on + strand at 268.948 kb on + strand at 268.948 kb on + strand at 268.956 kb on - strand at 268.956 kb on - strand at 268.976 kb on + strand at 269.060 kb on - strand, within DORF26459 at 269.074 kb on + strand, within DORF26459 at 269.074 kb on + strand, within DORF26459 at 269.093 kb on + strand, within DORF26459 at 269.147 kb on + strand, within DORF26459 at 269.155 kb on - strand, within DORF26459 at 269.189 kb on - strand, within DORF26459 at 269.194 kb on - strand, within DORF26459 at 269.260 kb on - strand at 269.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N) remove 267,059 + DORF26446 0.43 -0.6 267,211 + -0.4 267,221 + -1.1 267,221 + -1.3 267,221 + -3.2 267,221 + +0.4 267,221 + -0.2 267,229 - -0.4 267,229 - +1.5 267,229 - -1.8 267,281 + +0.9 267,489 + -0.7 267,491 + +0.2 267,508 - -1.0 267,615 + +1.4 267,674 - +1.6 267,681 + +1.9 267,728 - +3.1 267,743 - +0.1 267,769 - -1.0 267,779 - +1.4 267,812 - +4.6 267,839 - -2.0 267,902 - -1.6 267,935 + +0.1 267,981 - -0.9 268,025 - DVU0234 0.13 -1.0 268,025 - DVU0234 0.13 -0.3 268,027 + DVU0234 0.14 -0.6 268,051 + DVU0234 0.21 +1.9 268,059 - DVU0234 0.24 -0.5 268,059 - DVU0234 0.24 +0.2 268,083 + DVU0234 0.31 -0.1 268,178 - DVU0234 0.60 -1.2 268,207 - DVU0234 0.69 -0.7 268,215 + DVU0234 0.72 -3.0 268,220 + DVU0234 0.73 -1.4 268,223 - DVU0234 0.74 -0.3 268,317 - -2.1 268,378 - DVU0235 0.12 -0.4 268,397 - DVU0235 0.16 -2.0 268,407 - DVU0235 0.18 -1.0 268,422 + DVU0235 0.20 +1.1 268,478 + DVU0235 0.30 +2.0 268,486 - DVU0235 0.32 -1.2 268,486 - DVU0235 0.32 +0.5 268,556 - DVU0235 0.44 +2.0 268,654 - DVU0235 0.61 -3.2 268,661 + DVU0235 0.63 -0.7 268,699 + DVU0235 0.69 -0.8 268,701 + DVU0235 0.70 -0.6 268,701 + DVU0235 0.70 +1.3 268,709 - DVU0235 0.71 -1.5 268,709 - DVU0235 0.71 -0.5 268,709 - DVU0235 0.71 +2.2 268,714 - DVU0235 0.72 +1.2 268,762 + DVU0235 0.80 -1.2 268,779 + DVU0235 0.84 -0.1 268,779 + DVU0235 0.84 +0.2 268,779 + DVU0235 0.84 -0.9 268,787 - DVU0235 0.85 +0.7 268,787 - DVU0235 0.85 +0.8 268,793 + DVU0235 0.86 +1.2 268,803 + DVU0235 0.88 -1.2 268,822 - -0.5 268,872 + -0.6 268,898 + -1.5 268,930 + +0.7 268,948 + -1.5 268,948 + +0.1 268,956 - -2.0 268,956 - +1.7 268,976 + +0.3 269,060 - DORF26459 0.29 +3.4 269,074 + DORF26459 0.33 +1.1 269,074 + DORF26459 0.33 +0.6 269,093 + DORF26459 0.39 +2.8 269,147 + DORF26459 0.56 +0.2 269,155 - DORF26459 0.58 -1.9 269,189 - DORF26459 0.69 +2.5 269,194 - DORF26459 0.71 +0.8 269,260 - -0.1 269,304 - -0.7
Or see this region's nucleotide sequence