Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2775

Experiment: MoLS4 with L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2774 and DVU2775 are separated by 446 nucleotidesDVU2775 and dsrC are separated by 354 nucleotidesdsrC and DVU2777 are separated by 196 nucleotides DVU2774: DVU2774 - CBS domain protein/ACT domain protein (TIGR), at 2,881,702 to 2,882,385 DVU2774 DVU2775: DVU2775 - hypothetical protein (TIGR), at 2,882,832 to 2,883,107 DVU2775 DVU2776: dsrC - dissimilatory sulfite reductase, gamma subunit (TIGR), at 2,883,462 to 2,883,779 dsrC DVU2777: DVU2777 - hypothetical protein (TIGR), at 2,883,976 to 2,884,242 DVU2777 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2881.832 kb on - strand, within DVU2774at 2882.050 kb on + strand, within DVU2774at 2882.174 kb on - strand, within DVU2774at 2882.225 kb on + strand, within DVU2774at 2882.252 kb on + strand, within DVU2774at 2882.340 kb on + strandat 2882.343 kb on - strandat 2882.345 kb on - strandat 2882.396 kb on + strandat 2882.444 kb on + strandat 2882.444 kb on + strandat 2882.444 kb on + strandat 2882.452 kb on - strandat 2882.521 kb on + strandat 2882.547 kb on + strandat 2882.557 kb on + strandat 2882.578 kb on + strandat 2882.663 kb on + strandat 2882.676 kb on + strandat 2882.684 kb on - strandat 2883.132 kb on - strandat 2883.156 kb on - strandat 2883.169 kb on - strandat 2883.256 kb on - strandat 2883.354 kb on - strandat 2883.354 kb on - strandat 2883.906 kb on - strandat 2884.054 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.064 kb on + strand, within DVU2777at 2884.069 kb on + strand, within DVU2777at 2884.072 kb on - strand, within DVU2777at 2884.072 kb on - strand, within DVU2777at 2884.072 kb on - strand, within DVU2777at 2884.094 kb on + strand, within DVU2777at 2884.101 kb on + strand, within DVU2777

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N)
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2,881,832 - DVU2774 0.19 +3.0
2,882,050 + DVU2774 0.51 -0.4
2,882,174 - DVU2774 0.69 -1.9
2,882,225 + DVU2774 0.76 -2.9
2,882,252 + DVU2774 0.80 -0.9
2,882,340 + +0.2
2,882,343 - -0.4
2,882,345 - -1.2
2,882,396 + +0.8
2,882,444 + +0.8
2,882,444 + +1.4
2,882,444 + -0.7
2,882,452 - -2.5
2,882,521 + -0.7
2,882,547 + +4.2
2,882,557 + -0.8
2,882,578 + +3.8
2,882,663 + -2.3
2,882,676 + +0.4
2,882,684 - -0.7
2,883,132 - +3.7
2,883,156 - +0.3
2,883,169 - +2.8
2,883,256 - +1.8
2,883,354 - +4.8
2,883,354 - +3.7
2,883,906 - -0.4
2,884,054 + DVU2777 0.29 -0.1
2,884,064 + DVU2777 0.33 -2.0
2,884,064 + DVU2777 0.33 -2.5
2,884,064 + DVU2777 0.33 -0.6
2,884,064 + DVU2777 0.33 -1.9
2,884,069 + DVU2777 0.35 -0.8
2,884,072 - DVU2777 0.36 -0.0
2,884,072 - DVU2777 0.36 +1.1
2,884,072 - DVU2777 0.36 +1.5
2,884,094 + DVU2777 0.44 +1.3
2,884,101 + DVU2777 0.47 +0.1

Or see this region's nucleotide sequence