Experiment: MoLS4 with L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2645 and DVU2646 are separated by 62 nucleotides DVU2646 and DVU2647 are separated by 49 nucleotides DVU2647 and DVU2648 are separated by 69 nucleotides DVU2648 and DVU2649 overlap by 4 nucleotides
DVU2645: DVU2645 - Na+/H+ antiporter family protein (TIGR), at 2,761,599 to 2,762,999
DVU2645
DVU2646: DVU2646 - 1-aminocyclopropane-1-carboxylate deaminase (TIGR), at 2,763,062 to 2,764,060
DVU2646
DVU2647: DVU2647 - endoribonuclease, L-PSP family (TIGR), at 2,764,110 to 2,764,499
DVU2647
DVU2648: DVU2648 - hypothetical protein (TIGR), at 2,764,569 to 2,764,895
DVU2648
DVU2649: DVU2649 - hypothetical protein (TIGR), at 2,764,892 to 2,765,152
DVU2649
Position (kb)
2763
2764
2765 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2762.094 kb on + strand, within DVU2645 at 2762.321 kb on + strand, within DVU2645 at 2762.347 kb on + strand, within DVU2645 at 2762.434 kb on - strand, within DVU2645 at 2762.486 kb on + strand, within DVU2645 at 2762.551 kb on - strand, within DVU2645 at 2762.569 kb on + strand, within DVU2645 at 2762.577 kb on - strand, within DVU2645 at 2762.657 kb on - strand, within DVU2645 at 2762.685 kb on + strand, within DVU2645 at 2762.693 kb on - strand, within DVU2645 at 2762.693 kb on - strand, within DVU2645 at 2762.827 kb on + strand, within DVU2645 at 2762.835 kb on - strand, within DVU2645 at 2762.844 kb on + strand, within DVU2645 at 2762.844 kb on + strand, within DVU2645 at 2762.850 kb on + strand, within DVU2645 at 2762.855 kb on + strand, within DVU2645 at 2762.919 kb on - strand at 2762.966 kb on + strand at 2763.061 kb on - strand at 2763.061 kb on - strand at 2763.171 kb on - strand, within DVU2646 at 2763.182 kb on - strand, within DVU2646 at 2763.182 kb on - strand, within DVU2646 at 2763.187 kb on - strand, within DVU2646 at 2763.240 kb on + strand, within DVU2646 at 2763.289 kb on + strand, within DVU2646 at 2763.319 kb on + strand, within DVU2646 at 2763.387 kb on + strand, within DVU2646 at 2763.395 kb on - strand, within DVU2646 at 2763.490 kb on + strand, within DVU2646 at 2763.498 kb on - strand, within DVU2646 at 2763.749 kb on + strand, within DVU2646 at 2763.771 kb on - strand, within DVU2646 at 2763.806 kb on + strand, within DVU2646 at 2763.825 kb on + strand, within DVU2646 at 2763.833 kb on - strand, within DVU2646 at 2763.896 kb on - strand, within DVU2646 at 2763.940 kb on + strand, within DVU2646 at 2764.083 kb on + strand at 2764.096 kb on + strand at 2764.104 kb on - strand at 2764.115 kb on - strand at 2764.115 kb on - strand at 2764.158 kb on + strand, within DVU2647 at 2764.166 kb on - strand, within DVU2647 at 2764.166 kb on - strand, within DVU2647 at 2764.204 kb on + strand, within DVU2647 at 2764.209 kb on + strand, within DVU2647 at 2764.212 kb on - strand, within DVU2647 at 2764.234 kb on + strand, within DVU2647 at 2764.287 kb on - strand, within DVU2647 at 2764.326 kb on + strand, within DVU2647 at 2764.357 kb on - strand, within DVU2647 at 2764.495 kb on + strand at 2764.661 kb on - strand, within DVU2648 at 2764.684 kb on - strand, within DVU2648 at 2764.742 kb on - strand, within DVU2648 at 2764.767 kb on - strand, within DVU2648 at 2764.848 kb on + strand, within DVU2648 at 2764.856 kb on - strand, within DVU2648 at 2764.875 kb on - strand at 2764.899 kb on - strand at 2764.922 kb on - strand, within DVU2649 at 2764.944 kb on - strand, within DVU2649 at 2764.944 kb on - strand, within DVU2649 at 2764.955 kb on + strand, within DVU2649 at 2765.045 kb on + strand, within DVU2649 at 2765.053 kb on - strand, within DVU2649
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N) remove 2,762,094 + DVU2645 0.35 -0.4 2,762,321 + DVU2645 0.52 -1.0 2,762,347 + DVU2645 0.53 -2.0 2,762,434 - DVU2645 0.60 -1.5 2,762,486 + DVU2645 0.63 -0.1 2,762,551 - DVU2645 0.68 -0.8 2,762,569 + DVU2645 0.69 +0.5 2,762,577 - DVU2645 0.70 -1.4 2,762,657 - DVU2645 0.76 -1.0 2,762,685 + DVU2645 0.78 +2.5 2,762,693 - DVU2645 0.78 -0.0 2,762,693 - DVU2645 0.78 +0.6 2,762,827 + DVU2645 0.88 +0.7 2,762,835 - DVU2645 0.88 -1.0 2,762,844 + DVU2645 0.89 -0.5 2,762,844 + DVU2645 0.89 -1.6 2,762,850 + DVU2645 0.89 +1.6 2,762,855 + DVU2645 0.90 +0.3 2,762,919 - -0.1 2,762,966 + -2.3 2,763,061 - +0.8 2,763,061 - +1.8 2,763,171 - DVU2646 0.11 -1.5 2,763,182 - DVU2646 0.12 +0.5 2,763,182 - DVU2646 0.12 -1.6 2,763,187 - DVU2646 0.13 -1.2 2,763,240 + DVU2646 0.18 -0.8 2,763,289 + DVU2646 0.23 -0.1 2,763,319 + DVU2646 0.26 +1.6 2,763,387 + DVU2646 0.33 -0.2 2,763,395 - DVU2646 0.33 +0.5 2,763,490 + DVU2646 0.43 -0.3 2,763,498 - DVU2646 0.44 -1.6 2,763,749 + DVU2646 0.69 +0.1 2,763,771 - DVU2646 0.71 -1.1 2,763,806 + DVU2646 0.74 +0.5 2,763,825 + DVU2646 0.76 +0.6 2,763,833 - DVU2646 0.77 +1.8 2,763,896 - DVU2646 0.83 -0.9 2,763,940 + DVU2646 0.88 +0.2 2,764,083 + -0.2 2,764,096 + -0.7 2,764,104 - +0.6 2,764,115 - -2.7 2,764,115 - +1.1 2,764,158 + DVU2647 0.12 +0.5 2,764,166 - DVU2647 0.14 -1.6 2,764,166 - DVU2647 0.14 +1.8 2,764,204 + DVU2647 0.24 -2.0 2,764,209 + DVU2647 0.25 -0.6 2,764,212 - DVU2647 0.26 +2.1 2,764,234 + DVU2647 0.32 -1.5 2,764,287 - DVU2647 0.45 -2.0 2,764,326 + DVU2647 0.55 -0.8 2,764,357 - DVU2647 0.63 +0.2 2,764,495 + -0.6 2,764,661 - DVU2648 0.28 -1.0 2,764,684 - DVU2648 0.35 -2.6 2,764,742 - DVU2648 0.53 -0.7 2,764,767 - DVU2648 0.61 -0.2 2,764,848 + DVU2648 0.85 +0.9 2,764,856 - DVU2648 0.88 -0.4 2,764,875 - -1.4 2,764,899 - -2.9 2,764,922 - DVU2649 0.11 +0.6 2,764,944 - DVU2649 0.20 -0.5 2,764,944 - DVU2649 0.20 +2.4 2,764,955 + DVU2649 0.24 +2.3 2,765,045 + DVU2649 0.59 -2.0 2,765,053 - DVU2649 0.62 +1.8
Or see this region's nucleotide sequence