Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1907

Experiment: MoLS4 with L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheW-2 and DVU1905 are separated by 224 nucleotidesDVU1905 and ugd are separated by 374 nucleotidesugd and pdxJ are separated by 151 nucleotidespdxJ and acpS are separated by 10 nucleotides DVU1904: cheW-2 - chemotaxis protein CheW (TIGR), at 1,980,940 to 1,981,416 cheW-2 DVU1905: DVU1905 - hypothetical protein (TIGR), at 1,981,641 to 1,981,865 DVU1905 DVU1907: ugd - UDP-glucose 6-dehydrogenase (TIGR), at 1,982,240 to 1,983,577 ugd DVU1908: pdxJ - pyridoxal phosphate biosynthetic protein PdxJ (TIGR), at 1,983,729 to 1,984,454 pdxJ DVU1909: acpS - holo-(acyl-carrier-protein) synthase (TIGR), at 1,984,465 to 1,984,839 acpS Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1981.287 kb on - strand, within cheW-2at 1981.347 kb on + strand, within cheW-2at 1981.399 kb on + strandat 1981.399 kb on + strandat 1981.399 kb on + strandat 1981.418 kb on + strandat 1981.426 kb on - strandat 1981.426 kb on - strandat 1981.492 kb on - strandat 1981.496 kb on + strandat 1981.547 kb on + strandat 1981.550 kb on - strandat 1981.677 kb on - strand, within DVU1905at 1981.846 kb on + strandat 1981.948 kb on - strandat 1981.980 kb on - strandat 1982.063 kb on - strandat 1982.165 kb on + strandat 1983.589 kb on - strandat 1983.685 kb on + strandat 1983.688 kb on - strandat 1983.725 kb on + strandat 1983.884 kb on + strand, within pdxJat 1984.186 kb on + strand, within pdxJat 1984.255 kb on + strand, within pdxJ

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N)
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1,981,287 - cheW-2 DVU1904 0.73 -2.2
1,981,347 + cheW-2 DVU1904 0.85 -3.7
1,981,399 + -0.7
1,981,399 + -2.5
1,981,399 + -1.8
1,981,418 + -1.5
1,981,426 - +0.5
1,981,426 - -0.9
1,981,492 - +1.8
1,981,496 + -1.5
1,981,547 + -0.9
1,981,550 - -1.8
1,981,677 - DVU1905 0.16 -0.8
1,981,846 + -0.9
1,981,948 - -2.1
1,981,980 - +2.8
1,982,063 - -0.7
1,982,165 + -1.1
1,983,589 - +0.5
1,983,685 + +0.5
1,983,688 - -1.2
1,983,725 + -1.3
1,983,884 + pdxJ DVU1908 0.21 +1.8
1,984,186 + pdxJ DVU1908 0.63 -2.3
1,984,255 + pdxJ DVU1908 0.72 -0.7

Or see this region's nucleotide sequence