Experiment: MoLS4 with L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0858 and DORF7824 are separated by 84 nucleotides DORF7824 and DVU0859 are separated by 14 nucleotides DVU0859 and DORF7832 are separated by 76 nucleotides
DVU0858: DVU0858 - lipoprotein, putative (TIGR), at 948,258 to 948,941
DVU0858
DORF7824: DORF7824 - SEED: FIG00603141: hypothetical protein, at 949,026 to 949,361
DORF7824
DVU0859: DVU0859 - hypothetical protein (TIGR), at 949,376 to 950,656
DVU0859
DORF7832: DORF7832 - SEED: FIG00602569: hypothetical protein, at 950,733 to 952,319
DORF7832
Position (kb) 949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 948.394 kb on - strand, within DVU0858 at 948.403 kb on + strand, within DVU0858 at 948.571 kb on + strand, within DVU0858 at 948.579 kb on - strand, within DVU0858 at 948.603 kb on - strand, within DVU0858 at 948.664 kb on - strand, within DVU0858 at 948.664 kb on - strand, within DVU0858 at 948.794 kb on - strand, within DVU0858 at 948.795 kb on - strand, within DVU0858 at 948.854 kb on - strand, within DVU0858 at 948.894 kb on + strand at 948.894 kb on + strand at 948.902 kb on - strand at 948.925 kb on + strand at 948.960 kb on - strand at 948.974 kb on + strand at 949.042 kb on - strand at 949.107 kb on - strand, within DORF7824 at 949.109 kb on + strand, within DORF7824 at 949.112 kb on - strand, within DORF7824 at 949.247 kb on - strand, within DORF7824 at 949.264 kb on + strand, within DORF7824 at 949.264 kb on + strand, within DORF7824 at 949.310 kb on + strand, within DORF7824 at 949.351 kb on + strand at 949.419 kb on - strand at 949.507 kb on - strand, within DVU0859 at 949.562 kb on + strand, within DVU0859 at 949.568 kb on - strand, within DVU0859 at 949.783 kb on + strand, within DVU0859 at 949.800 kb on - strand, within DVU0859 at 949.806 kb on + strand, within DVU0859 at 949.857 kb on - strand, within DVU0859 at 949.937 kb on + strand, within DVU0859 at 949.943 kb on + strand, within DVU0859 at 950.000 kb on + strand, within DVU0859 at 950.000 kb on + strand, within DVU0859 at 950.085 kb on + strand, within DVU0859 at 950.129 kb on - strand, within DVU0859 at 950.129 kb on - strand, within DVU0859 at 950.165 kb on + strand, within DVU0859 at 950.584 kb on - strand at 950.646 kb on + strand at 950.654 kb on - strand at 950.687 kb on + strand at 950.700 kb on - strand at 950.715 kb on - strand at 950.720 kb on + strand at 950.720 kb on + strand at 950.720 kb on + strand at 950.761 kb on + strand at 950.772 kb on - strand at 950.772 kb on - strand at 950.914 kb on + strand, within DORF7832 at 950.937 kb on + strand, within DORF7832 at 951.012 kb on - strand, within DORF7832 at 951.028 kb on - strand, within DORF7832 at 951.064 kb on + strand, within DORF7832 at 951.081 kb on + strand, within DORF7832 at 951.223 kb on + strand, within DORF7832 at 951.231 kb on - strand, within DORF7832 at 951.283 kb on + strand, within DORF7832 at 951.309 kb on + strand, within DORF7832 at 951.374 kb on + strand, within DORF7832 at 951.489 kb on - strand, within DORF7832 at 951.608 kb on - strand, within DORF7832 at 951.649 kb on + strand, within DORF7832
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Threonine (N) remove 948,394 - DVU0858 0.20 -0.7 948,403 + DVU0858 0.21 -1.1 948,571 + DVU0858 0.46 -2.2 948,579 - DVU0858 0.47 -1.1 948,603 - DVU0858 0.50 -1.5 948,664 - DVU0858 0.59 -1.3 948,664 - DVU0858 0.59 -1.4 948,794 - DVU0858 0.78 -1.1 948,795 - DVU0858 0.79 -0.9 948,854 - DVU0858 0.87 -0.1 948,894 + -1.6 948,894 + -1.3 948,902 - -1.8 948,925 + -1.6 948,960 - -0.9 948,974 + -0.9 949,042 - +0.7 949,107 - DORF7824 0.24 +0.2 949,109 + DORF7824 0.25 +2.2 949,112 - DORF7824 0.26 -0.0 949,247 - DORF7824 0.66 +0.1 949,264 + DORF7824 0.71 +0.4 949,264 + DORF7824 0.71 +0.4 949,310 + DORF7824 0.85 +2.5 949,351 + +0.8 949,419 - +0.1 949,507 - DVU0859 0.10 -1.2 949,562 + DVU0859 0.15 -1.1 949,568 - DVU0859 0.15 -3.3 949,783 + DVU0859 0.32 -1.0 949,800 - DVU0859 0.33 +0.4 949,806 + DVU0859 0.34 -0.7 949,857 - DVU0859 0.38 +0.3 949,937 + DVU0859 0.44 -1.2 949,943 + DVU0859 0.44 +0.5 950,000 + DVU0859 0.49 -0.4 950,000 + DVU0859 0.49 -0.9 950,085 + DVU0859 0.55 -0.6 950,129 - DVU0859 0.59 -0.7 950,129 - DVU0859 0.59 -0.6 950,165 + DVU0859 0.62 -1.1 950,584 - +1.0 950,646 + -0.1 950,654 - -1.3 950,687 + +1.9 950,700 - +2.2 950,715 - +0.0 950,720 + -2.1 950,720 + +6.1 950,720 + -0.4 950,761 + -1.6 950,772 - -0.4 950,772 - -1.1 950,914 + DORF7832 0.11 +0.4 950,937 + DORF7832 0.13 +0.6 951,012 - DORF7832 0.18 -0.8 951,028 - DORF7832 0.19 +2.0 951,064 + DORF7832 0.21 -1.5 951,081 + DORF7832 0.22 +0.1 951,223 + DORF7832 0.31 -1.6 951,231 - DORF7832 0.31 -1.5 951,283 + DORF7832 0.35 +1.3 951,309 + DORF7832 0.36 -1.9 951,374 + DORF7832 0.40 -1.1 951,489 - DORF7832 0.48 -1.0 951,608 - DORF7832 0.55 -0.9 951,649 + DORF7832 0.58 -0.7
Or see this region's nucleotide sequence