Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.849.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.848.1 and Xcc-8004.849.1 are separated by 17 nucleotidesXcc-8004.849.1 and Xcc-8004.850.1 are separated by 246 nucleotides Xcc-8004.848.1: Xcc-8004.848.1 - Mobile element protein, at 799,480 to 800,334 Xcc-8004.848.1 Xcc-8004.849.1: Xcc-8004.849.1 - Mobile element protein, at 800,352 to 800,645 Xcc-8004.849.1 Xcc-8004.850.1: Xcc-8004.850.1 - ATP-dependent protease HslV (EC 3.4.25.-), at 800,892 to 801,671 Xcc-8004.850.1 Position (kb) 800 801Strain fitness (log2 ratio) -2 -1 0 1 2at 799.353 kb on + strandat 799.458 kb on - strandat 800.667 kb on + strandat 800.667 kb on + strandat 800.885 kb on + strandat 800.885 kb on + strandat 800.887 kb on + strandat 800.887 kb on + strandat 800.982 kb on - strand, within Xcc-8004.850.1at 800.982 kb on - strand, within Xcc-8004.850.1at 801.020 kb on - strand, within Xcc-8004.850.1at 801.027 kb on - strand, within Xcc-8004.850.1at 801.228 kb on - strand, within Xcc-8004.850.1at 801.284 kb on - strand, within Xcc-8004.850.1at 801.537 kb on + strand, within Xcc-8004.850.1at 801.537 kb on + strand, within Xcc-8004.850.1at 801.538 kb on - strand, within Xcc-8004.850.1at 801.636 kb on + strandat 801.636 kb on + strandat 801.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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799,353 + -0.6
799,458 - +1.7
800,667 + -1.6
800,667 + -0.1
800,885 + +1.9
800,885 + +0.6
800,887 + -1.6
800,887 + +0.3
800,982 - Xcc-8004.850.1 0.12 +0.4
800,982 - Xcc-8004.850.1 0.12 +0.4
801,020 - Xcc-8004.850.1 0.16 +0.0
801,027 - Xcc-8004.850.1 0.17 +0.2
801,228 - Xcc-8004.850.1 0.43 -1.6
801,284 - Xcc-8004.850.1 0.50 -2.0
801,537 + Xcc-8004.850.1 0.83 -0.5
801,537 + Xcc-8004.850.1 0.83 -1.0
801,538 - Xcc-8004.850.1 0.83 -0.4
801,636 + +0.5
801,636 + +0.1
801,637 - +0.6

Or see this region's nucleotide sequence