Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.720.1 and Xcc-8004.721.1 overlap by 4 nucleotides Xcc-8004.721.1 and Xcc-8004.722.1 overlap by 4 nucleotides Xcc-8004.722.1 and Xcc-8004.723.1 are separated by 189 nucleotides Xcc-8004.723.1 and Xcc-8004.724.1 are separated by 82 nucleotides
Xcc-8004.720.1: Xcc-8004.720.1 - putative iron-regulated membrane protein, at 669,886 to 671,508
Xcc-8004.720.1
Xcc-8004.721.1: Xcc-8004.721.1 - putative; ORF located using Glimmer/Genemark, at 671,505 to 671,825
Xcc-8004.721.1
Xcc-8004.722.1: Xcc-8004.722.1 - putative; ORF located using Glimmer/Genemark, at 671,822 to 672,172
Xcc-8004.722.1
Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175
Xcc-8004.723.1
Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799
Xcc-8004.724.1
Position (kb) 672
673
674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.420 kb on - strand at 671.420 kb on - strand at 671.578 kb on + strand, within Xcc-8004.721.1 at 671.579 kb on - strand, within Xcc-8004.721.1 at 671.579 kb on - strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.083 kb on + strand, within Xcc-8004.722.1 at 672.083 kb on + strand, within Xcc-8004.722.1 at 672.084 kb on - strand, within Xcc-8004.722.1 at 672.084 kb on - strand, within Xcc-8004.722.1 at 672.196 kb on + strand at 672.282 kb on - strand at 672.492 kb on + strand at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.697 kb on - strand, within Xcc-8004.723.1 at 672.697 kb on - strand, within Xcc-8004.723.1 at 672.893 kb on + strand, within Xcc-8004.723.1 at 672.893 kb on + strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.899 kb on + strand, within Xcc-8004.723.1 at 673.091 kb on + strand, within Xcc-8004.723.1 at 673.091 kb on + strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.206 kb on - strand, within Xcc-8004.723.1 at 673.361 kb on - strand, within Xcc-8004.723.1 at 673.693 kb on + strand, within Xcc-8004.723.1 at 673.958 kb on + strand, within Xcc-8004.723.1 at 673.959 kb on - strand, within Xcc-8004.723.1 at 674.052 kb on - strand, within Xcc-8004.723.1 at 674.122 kb on + strand, within Xcc-8004.723.1 at 674.255 kb on - strand, within Xcc-8004.723.1 at 674.255 kb on - strand, within Xcc-8004.723.1 at 674.432 kb on + strand, within Xcc-8004.723.1 at 674.634 kb on - strand, within Xcc-8004.723.1 at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.290 kb on - strand at 675.326 kb on - strand at 675.330 kb on + strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.421 kb on + strand, within Xcc-8004.724.1 at 675.422 kb on - strand, within Xcc-8004.724.1 at 675.424 kb on - strand, within Xcc-8004.724.1 at 675.453 kb on + strand, within Xcc-8004.724.1 at 675.454 kb on - strand, within Xcc-8004.724.1 at 675.614 kb on + strand, within Xcc-8004.724.1 at 675.615 kb on - strand, within Xcc-8004.724.1 at 675.875 kb on - strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.146 kb on - strand, within Xcc-8004.724.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 671,419 + +0.4 671,419 + -0.9 671,419 + -1.3 671,419 + -0.8 671,419 + +0.5 671,419 + -0.9 671,420 - -0.9 671,420 - -1.6 671,578 + Xcc-8004.721.1 0.23 +0.0 671,579 - Xcc-8004.721.1 0.23 -0.5 671,579 - Xcc-8004.721.1 0.23 -0.6 671,697 + Xcc-8004.721.1 0.60 +1.1 671,697 + Xcc-8004.721.1 0.60 +1.3 671,697 + Xcc-8004.721.1 0.60 +0.8 672,030 + Xcc-8004.722.1 0.59 +0.8 672,030 + Xcc-8004.722.1 0.59 +2.3 672,030 + Xcc-8004.722.1 0.59 -0.1 672,083 + Xcc-8004.722.1 0.74 -0.6 672,083 + Xcc-8004.722.1 0.74 -0.2 672,084 - Xcc-8004.722.1 0.75 +2.0 672,084 - Xcc-8004.722.1 0.75 +0.4 672,196 + +1.1 672,282 - -1.5 672,492 + -0.3 672,696 + Xcc-8004.723.1 0.12 +0.6 672,696 + Xcc-8004.723.1 0.12 +0.5 672,696 + Xcc-8004.723.1 0.12 -0.8 672,696 + Xcc-8004.723.1 0.12 -0.0 672,697 - Xcc-8004.723.1 0.12 +0.9 672,697 - Xcc-8004.723.1 0.12 +0.5 672,893 + Xcc-8004.723.1 0.19 +0.3 672,893 + Xcc-8004.723.1 0.19 -0.9 672,894 - Xcc-8004.723.1 0.19 -0.1 672,894 - Xcc-8004.723.1 0.19 -1.2 672,894 - Xcc-8004.723.1 0.19 +0.7 672,894 - Xcc-8004.723.1 0.19 -1.4 672,899 + Xcc-8004.723.1 0.19 -1.0 673,091 + Xcc-8004.723.1 0.26 -0.7 673,091 + Xcc-8004.723.1 0.26 -0.8 673,092 - Xcc-8004.723.1 0.26 -2.6 673,092 - Xcc-8004.723.1 0.26 -1.9 673,092 - Xcc-8004.723.1 0.26 -0.2 673,124 + Xcc-8004.723.1 0.27 -1.0 673,124 + Xcc-8004.723.1 0.27 +0.2 673,124 + Xcc-8004.723.1 0.27 -0.5 673,124 + Xcc-8004.723.1 0.27 +0.8 673,124 + Xcc-8004.723.1 0.27 -0.4 673,206 - Xcc-8004.723.1 0.30 -0.6 673,361 - Xcc-8004.723.1 0.36 -1.1 673,693 + Xcc-8004.723.1 0.47 -0.8 673,958 + Xcc-8004.723.1 0.57 +0.5 673,959 - Xcc-8004.723.1 0.57 +0.9 674,052 - Xcc-8004.723.1 0.60 +1.3 674,122 + Xcc-8004.723.1 0.63 -0.5 674,255 - Xcc-8004.723.1 0.67 -2.2 674,255 - Xcc-8004.723.1 0.67 -0.2 674,432 + Xcc-8004.723.1 0.74 -0.6 674,634 - Xcc-8004.723.1 0.81 +2.1 675,289 + -0.1 675,289 + -0.5 675,289 + -0.6 675,289 + -0.6 675,289 + +0.2 675,290 - -1.1 675,326 - +0.3 675,330 + -0.9 675,396 - +0.2 675,396 - +0.3 675,396 - +2.4 675,421 + Xcc-8004.724.1 0.11 +1.7 675,422 - Xcc-8004.724.1 0.11 +0.2 675,424 - Xcc-8004.724.1 0.11 +0.7 675,453 + Xcc-8004.724.1 0.13 +0.3 675,454 - Xcc-8004.724.1 0.13 -0.9 675,614 + Xcc-8004.724.1 0.23 +0.3 675,615 - Xcc-8004.724.1 0.23 -0.2 675,875 - Xcc-8004.724.1 0.40 -1.8 675,953 + Xcc-8004.724.1 0.45 -2.7 675,953 + Xcc-8004.724.1 0.45 +0.7 676,067 + Xcc-8004.724.1 0.52 +1.1 676,067 + Xcc-8004.724.1 0.52 -0.0 676,068 - Xcc-8004.724.1 0.53 +0.1 676,068 - Xcc-8004.724.1 0.53 -0.1 676,146 - Xcc-8004.724.1 0.58 -0.5
Or see this region's nucleotide sequence