Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4445.1 and Xcc-8004.4446.1 are separated by 107 nucleotides Xcc-8004.4446.1 and Xcc-8004.4447.1 are separated by 114 nucleotides Xcc-8004.4447.1 and Xcc-8004.4448.1 are separated by 9 nucleotides
Xcc-8004.4445.1: Xcc-8004.4445.1 - FIG000988: Predicted permease, at 4,260,743 to 4,261,825
Xcc-8004.4445.1
Xcc-8004.4446.1: Xcc-8004.4446.1 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 4,261,933 to 4,263,414
Xcc-8004.4446.1
Xcc-8004.4447.1: Xcc-8004.4447.1 - DNA polymerase III chi subunit (EC 2.7.7.7), at 4,263,529 to 4,263,954
Xcc-8004.4447.1
Xcc-8004.4448.1: Xcc-8004.4448.1 - FIG01211758: hypothetical protein, at 4,263,964 to 4,265,196
Xcc-8004.4448.1
Position (kb) 4261
4262
4263
4264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4261.826 kb on - strand at 4261.826 kb on - strand at 4261.826 kb on - strand at 4261.826 kb on - strand at 4261.841 kb on + strand at 4261.875 kb on + strand at 4261.875 kb on + strand at 4262.203 kb on + strand, within Xcc-8004.4446.1 at 4262.356 kb on + strand, within Xcc-8004.4446.1 at 4262.356 kb on + strand, within Xcc-8004.4446.1 at 4262.506 kb on + strand, within Xcc-8004.4446.1 at 4262.506 kb on + strand, within Xcc-8004.4446.1 at 4262.506 kb on + strand, within Xcc-8004.4446.1 at 4262.506 kb on + strand, within Xcc-8004.4446.1 at 4262.521 kb on + strand, within Xcc-8004.4446.1 at 4262.521 kb on + strand, within Xcc-8004.4446.1 at 4262.701 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.782 kb on + strand, within Xcc-8004.4446.1 at 4262.902 kb on + strand, within Xcc-8004.4446.1 at 4263.001 kb on + strand, within Xcc-8004.4446.1 at 4263.001 kb on + strand, within Xcc-8004.4446.1 at 4263.001 kb on + strand, within Xcc-8004.4446.1 at 4263.184 kb on + strand, within Xcc-8004.4446.1 at 4263.220 kb on + strand, within Xcc-8004.4446.1 at 4263.220 kb on + strand, within Xcc-8004.4446.1 at 4263.425 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.952 kb on + strand at 4263.963 kb on + strand at 4263.963 kb on + strand at 4263.997 kb on + strand at 4263.997 kb on + strand at 4264.031 kb on + strand at 4264.032 kb on - strand at 4264.109 kb on + strand, within Xcc-8004.4448.1 at 4264.109 kb on + strand, within Xcc-8004.4448.1 at 4264.142 kb on + strand, within Xcc-8004.4448.1 at 4264.240 kb on + strand, within Xcc-8004.4448.1 at 4264.240 kb on + strand, within Xcc-8004.4448.1 at 4264.240 kb on + strand, within Xcc-8004.4448.1 at 4264.276 kb on + strand, within Xcc-8004.4448.1 at 4264.276 kb on + strand, within Xcc-8004.4448.1 at 4264.410 kb on - strand, within Xcc-8004.4448.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,261,826 - +0.5 4,261,826 - -1.8 4,261,826 - +1.4 4,261,826 - -0.8 4,261,841 + -0.4 4,261,875 + +0.3 4,261,875 + +1.1 4,262,203 + Xcc-8004.4446.1 0.18 +2.1 4,262,356 + Xcc-8004.4446.1 0.29 -0.9 4,262,356 + Xcc-8004.4446.1 0.29 +1.7 4,262,506 + Xcc-8004.4446.1 0.39 -0.5 4,262,506 + Xcc-8004.4446.1 0.39 +0.5 4,262,506 + Xcc-8004.4446.1 0.39 -0.9 4,262,506 + Xcc-8004.4446.1 0.39 -1.6 4,262,521 + Xcc-8004.4446.1 0.40 -1.9 4,262,521 + Xcc-8004.4446.1 0.40 -0.9 4,262,701 + Xcc-8004.4446.1 0.52 +0.1 4,262,782 + Xcc-8004.4446.1 0.57 -0.7 4,262,782 + Xcc-8004.4446.1 0.57 -0.3 4,262,782 + Xcc-8004.4446.1 0.57 -0.9 4,262,782 + Xcc-8004.4446.1 0.57 -1.7 4,262,902 + Xcc-8004.4446.1 0.65 +0.9 4,263,001 + Xcc-8004.4446.1 0.72 -0.5 4,263,001 + Xcc-8004.4446.1 0.72 -2.1 4,263,001 + Xcc-8004.4446.1 0.72 -1.8 4,263,184 + Xcc-8004.4446.1 0.84 +0.1 4,263,220 + Xcc-8004.4446.1 0.87 -1.5 4,263,220 + Xcc-8004.4446.1 0.87 -0.7 4,263,425 + -0.1 4,263,952 + -1.4 4,263,952 + -1.4 4,263,952 + -1.3 4,263,952 + -0.0 4,263,952 + -0.5 4,263,952 + -0.1 4,263,952 + +2.1 4,263,963 + -2.4 4,263,963 + -2.4 4,263,997 + -0.3 4,263,997 + +0.3 4,264,031 + +1.5 4,264,032 - +2.5 4,264,109 + Xcc-8004.4448.1 0.12 -1.2 4,264,109 + Xcc-8004.4448.1 0.12 -1.6 4,264,142 + Xcc-8004.4448.1 0.14 +0.8 4,264,240 + Xcc-8004.4448.1 0.22 -1.9 4,264,240 + Xcc-8004.4448.1 0.22 -0.2 4,264,240 + Xcc-8004.4448.1 0.22 +0.9 4,264,276 + Xcc-8004.4448.1 0.25 +1.1 4,264,276 + Xcc-8004.4448.1 0.25 -1.2 4,264,410 - Xcc-8004.4448.1 0.36 +1.8
Or see this region's nucleotide sequence