Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3607.1 and Xcc-8004.3608.1 overlap by 4 nucleotides Xcc-8004.3608.1 and Xcc-8004.3609.1 overlap by 4 nucleotides Xcc-8004.3609.1 and Xcc-8004.3610.1 are separated by 17 nucleotides
Xcc-8004.3607.1: Xcc-8004.3607.1 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 3,495,419 to 3,496,714
Xcc-8004.3607.1
Xcc-8004.3608.1: Xcc-8004.3608.1 - FIG024285: Hypothetical protein, at 3,496,711 to 3,497,256
Xcc-8004.3608.1
Xcc-8004.3609.1: Xcc-8004.3609.1 - FIG005069: Hypothetical protein, at 3,497,253 to 3,498,035
Xcc-8004.3609.1
Xcc-8004.3610.1: Xcc-8004.3610.1 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 3,498,053 to 3,499,123
Xcc-8004.3610.1
Position (kb) 3496
3497
3498 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3495.802 kb on + strand, within Xcc-8004.3607.1 at 3495.854 kb on + strand, within Xcc-8004.3607.1 at 3495.854 kb on + strand, within Xcc-8004.3607.1 at 3495.855 kb on - strand, within Xcc-8004.3607.1 at 3495.905 kb on + strand, within Xcc-8004.3607.1 at 3495.905 kb on + strand, within Xcc-8004.3607.1 at 3495.905 kb on + strand, within Xcc-8004.3607.1 at 3495.906 kb on - strand, within Xcc-8004.3607.1 at 3496.190 kb on + strand, within Xcc-8004.3607.1 at 3496.211 kb on + strand, within Xcc-8004.3607.1 at 3496.211 kb on + strand, within Xcc-8004.3607.1 at 3496.212 kb on - strand, within Xcc-8004.3607.1 at 3496.260 kb on - strand, within Xcc-8004.3607.1 at 3496.271 kb on + strand, within Xcc-8004.3607.1 at 3496.271 kb on + strand, within Xcc-8004.3607.1 at 3496.271 kb on + strand, within Xcc-8004.3607.1 at 3496.271 kb on + strand, within Xcc-8004.3607.1 at 3496.271 kb on + strand, within Xcc-8004.3607.1 at 3496.272 kb on - strand, within Xcc-8004.3607.1 at 3496.272 kb on - strand, within Xcc-8004.3607.1 at 3496.493 kb on + strand, within Xcc-8004.3607.1 at 3496.493 kb on + strand, within Xcc-8004.3607.1 at 3496.493 kb on + strand, within Xcc-8004.3607.1 at 3496.493 kb on + strand, within Xcc-8004.3607.1 at 3496.494 kb on - strand, within Xcc-8004.3607.1 at 3496.494 kb on - strand, within Xcc-8004.3607.1 at 3496.494 kb on - strand, within Xcc-8004.3607.1 at 3496.494 kb on - strand, within Xcc-8004.3607.1 at 3496.494 kb on - strand, within Xcc-8004.3607.1 at 3496.494 kb on - strand, within Xcc-8004.3607.1 at 3496.562 kb on + strand, within Xcc-8004.3607.1 at 3496.605 kb on - strand at 3496.729 kb on + strand at 3496.729 kb on + strand at 3496.729 kb on + strand at 3496.729 kb on + strand at 3496.730 kb on - strand at 3496.730 kb on - strand at 3496.730 kb on - strand at 3496.826 kb on - strand, within Xcc-8004.3608.1 at 3496.826 kb on - strand, within Xcc-8004.3608.1 at 3496.936 kb on + strand, within Xcc-8004.3608.1 at 3497.200 kb on + strand, within Xcc-8004.3608.1 at 3497.200 kb on + strand, within Xcc-8004.3608.1 at 3497.201 kb on - strand, within Xcc-8004.3608.1 at 3497.360 kb on - strand, within Xcc-8004.3609.1 at 3497.392 kb on - strand, within Xcc-8004.3609.1 at 3497.392 kb on - strand, within Xcc-8004.3609.1 at 3497.808 kb on + strand, within Xcc-8004.3609.1 at 3497.808 kb on + strand, within Xcc-8004.3609.1 at 3497.808 kb on + strand, within Xcc-8004.3609.1 at 3497.809 kb on - strand, within Xcc-8004.3609.1 at 3497.809 kb on - strand, within Xcc-8004.3609.1 at 3497.838 kb on + strand, within Xcc-8004.3609.1 at 3497.839 kb on - strand, within Xcc-8004.3609.1 at 3497.920 kb on - strand, within Xcc-8004.3609.1 at 3497.920 kb on - strand, within Xcc-8004.3609.1 at 3497.940 kb on + strand, within Xcc-8004.3609.1 at 3497.942 kb on + strand, within Xcc-8004.3609.1 at 3497.942 kb on + strand, within Xcc-8004.3609.1 at 3497.943 kb on - strand, within Xcc-8004.3609.1 at 3497.980 kb on - strand at 3497.988 kb on + strand at 3497.988 kb on + strand at 3498.165 kb on + strand, within Xcc-8004.3610.1 at 3498.165 kb on + strand, within Xcc-8004.3610.1 at 3498.165 kb on + strand, within Xcc-8004.3610.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,495,802 + Xcc-8004.3607.1 0.30 +1.4 3,495,854 + Xcc-8004.3607.1 0.34 +1.2 3,495,854 + Xcc-8004.3607.1 0.34 -0.7 3,495,855 - Xcc-8004.3607.1 0.34 +0.6 3,495,905 + Xcc-8004.3607.1 0.38 -0.2 3,495,905 + Xcc-8004.3607.1 0.38 +3.0 3,495,905 + Xcc-8004.3607.1 0.38 -1.1 3,495,906 - Xcc-8004.3607.1 0.38 +0.1 3,496,190 + Xcc-8004.3607.1 0.59 +0.1 3,496,211 + Xcc-8004.3607.1 0.61 +0.9 3,496,211 + Xcc-8004.3607.1 0.61 +1.1 3,496,212 - Xcc-8004.3607.1 0.61 +0.7 3,496,260 - Xcc-8004.3607.1 0.65 +0.8 3,496,271 + Xcc-8004.3607.1 0.66 +0.6 3,496,271 + Xcc-8004.3607.1 0.66 +0.8 3,496,271 + Xcc-8004.3607.1 0.66 +0.3 3,496,271 + Xcc-8004.3607.1 0.66 +0.4 3,496,271 + Xcc-8004.3607.1 0.66 -0.4 3,496,272 - Xcc-8004.3607.1 0.66 -0.8 3,496,272 - Xcc-8004.3607.1 0.66 +1.5 3,496,493 + Xcc-8004.3607.1 0.83 +0.3 3,496,493 + Xcc-8004.3607.1 0.83 +0.8 3,496,493 + Xcc-8004.3607.1 0.83 +0.9 3,496,493 + Xcc-8004.3607.1 0.83 +0.4 3,496,494 - Xcc-8004.3607.1 0.83 +0.3 3,496,494 - Xcc-8004.3607.1 0.83 +3.7 3,496,494 - Xcc-8004.3607.1 0.83 +1.7 3,496,494 - Xcc-8004.3607.1 0.83 +0.6 3,496,494 - Xcc-8004.3607.1 0.83 -1.0 3,496,494 - Xcc-8004.3607.1 0.83 +0.7 3,496,562 + Xcc-8004.3607.1 0.88 +1.7 3,496,605 - -0.6 3,496,729 + +0.1 3,496,729 + -1.3 3,496,729 + +0.4 3,496,729 + -0.1 3,496,730 - -0.2 3,496,730 - +0.2 3,496,730 - -1.1 3,496,826 - Xcc-8004.3608.1 0.21 -1.8 3,496,826 - Xcc-8004.3608.1 0.21 +0.2 3,496,936 + Xcc-8004.3608.1 0.41 +0.1 3,497,200 + Xcc-8004.3608.1 0.90 +0.2 3,497,200 + Xcc-8004.3608.1 0.90 -0.6 3,497,201 - Xcc-8004.3608.1 0.90 +1.1 3,497,360 - Xcc-8004.3609.1 0.14 +0.2 3,497,392 - Xcc-8004.3609.1 0.18 +0.5 3,497,392 - Xcc-8004.3609.1 0.18 -0.8 3,497,808 + Xcc-8004.3609.1 0.71 +0.7 3,497,808 + Xcc-8004.3609.1 0.71 -1.9 3,497,808 + Xcc-8004.3609.1 0.71 +0.5 3,497,809 - Xcc-8004.3609.1 0.71 +1.8 3,497,809 - Xcc-8004.3609.1 0.71 -1.1 3,497,838 + Xcc-8004.3609.1 0.75 +0.1 3,497,839 - Xcc-8004.3609.1 0.75 -1.7 3,497,920 - Xcc-8004.3609.1 0.85 -0.2 3,497,920 - Xcc-8004.3609.1 0.85 +1.5 3,497,940 + Xcc-8004.3609.1 0.88 +0.5 3,497,942 + Xcc-8004.3609.1 0.88 +2.0 3,497,942 + Xcc-8004.3609.1 0.88 +0.8 3,497,943 - Xcc-8004.3609.1 0.88 -0.7 3,497,980 - -1.7 3,497,988 + -0.9 3,497,988 + +0.5 3,498,165 + Xcc-8004.3610.1 0.10 -0.6 3,498,165 + Xcc-8004.3610.1 0.10 +0.0 3,498,165 + Xcc-8004.3610.1 0.10 -0.5
Or see this region's nucleotide sequence