Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2873.1 and Xcc-8004.2874.1 are separated by 614 nucleotides Xcc-8004.2874.1 and Xcc-8004.2875.1 are separated by 137 nucleotides Xcc-8004.2875.1 and Xcc-8004.2877.1 are separated by 35 nucleotides
Xcc-8004.2873.1: Xcc-8004.2873.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,791,244 to 2,792,959
Xcc-8004.2873.1
Xcc-8004.2874.1: Xcc-8004.2874.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,793,574 to 2,795,955
Xcc-8004.2874.1
Xcc-8004.2875.1: Xcc-8004.2875.1 - hypothetical protein, at 2,796,093 to 2,796,428
Xcc-8004.2875.1
Xcc-8004.2877.1: Xcc-8004.2877.1 - Methyl-accepting chemotaxis protein, at 2,796,464 to 2,797,768
Xcc-8004.2877.1
Position (kb)
2793
2794
2795
2796 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2792.774 kb on - strand, within Xcc-8004.2873.1 at 2792.785 kb on - strand, within Xcc-8004.2873.1 at 2793.079 kb on + strand at 2793.079 kb on + strand at 2793.295 kb on + strand at 2793.464 kb on - strand at 2793.464 kb on - strand at 2793.464 kb on - strand at 2793.498 kb on - strand at 2793.718 kb on + strand at 2793.718 kb on + strand at 2793.718 kb on + strand at 2793.718 kb on + strand at 2793.755 kb on + strand at 2793.755 kb on + strand at 2793.756 kb on - strand at 2793.756 kb on - strand at 2793.756 kb on - strand at 2793.797 kb on - strand at 2793.797 kb on - strand at 2793.797 kb on - strand at 2793.797 kb on - strand at 2793.985 kb on + strand, within Xcc-8004.2874.1 at 2793.985 kb on + strand, within Xcc-8004.2874.1 at 2793.985 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.009 kb on + strand, within Xcc-8004.2874.1 at 2794.010 kb on - strand, within Xcc-8004.2874.1 at 2794.010 kb on - strand, within Xcc-8004.2874.1 at 2794.010 kb on - strand, within Xcc-8004.2874.1 at 2794.010 kb on - strand, within Xcc-8004.2874.1 at 2794.010 kb on - strand, within Xcc-8004.2874.1 at 2794.010 kb on - strand, within Xcc-8004.2874.1 at 2794.235 kb on - strand, within Xcc-8004.2874.1 at 2794.235 kb on - strand, within Xcc-8004.2874.1 at 2794.235 kb on - strand, within Xcc-8004.2874.1 at 2794.649 kb on + strand, within Xcc-8004.2874.1 at 2794.650 kb on - strand, within Xcc-8004.2874.1 at 2794.650 kb on - strand, within Xcc-8004.2874.1 at 2794.658 kb on - strand, within Xcc-8004.2874.1 at 2794.966 kb on + strand, within Xcc-8004.2874.1 at 2794.966 kb on + strand, within Xcc-8004.2874.1 at 2794.967 kb on - strand, within Xcc-8004.2874.1 at 2795.040 kb on + strand, within Xcc-8004.2874.1 at 2795.361 kb on + strand, within Xcc-8004.2874.1 at 2795.632 kb on + strand, within Xcc-8004.2874.1 at 2795.633 kb on - strand, within Xcc-8004.2874.1 at 2795.633 kb on - strand, within Xcc-8004.2874.1 at 2795.633 kb on - strand, within Xcc-8004.2874.1 at 2795.953 kb on + strand at 2795.953 kb on + strand at 2795.953 kb on + strand at 2795.953 kb on + strand at 2795.954 kb on - strand at 2795.954 kb on - strand at 2795.954 kb on - strand at 2796.020 kb on + strand at 2796.021 kb on - strand at 2796.021 kb on - strand at 2796.021 kb on - strand at 2796.029 kb on - strand at 2796.075 kb on + strand at 2796.075 kb on + strand at 2796.076 kb on - strand at 2796.095 kb on - strand at 2796.095 kb on - strand at 2796.195 kb on - strand, within Xcc-8004.2875.1 at 2796.257 kb on + strand, within Xcc-8004.2875.1 at 2796.257 kb on + strand, within Xcc-8004.2875.1 at 2796.257 kb on + strand, within Xcc-8004.2875.1 at 2796.257 kb on + strand, within Xcc-8004.2875.1 at 2796.258 kb on - strand, within Xcc-8004.2875.1 at 2796.258 kb on - strand, within Xcc-8004.2875.1 at 2796.258 kb on - strand, within Xcc-8004.2875.1 at 2796.258 kb on - strand, within Xcc-8004.2875.1 at 2796.258 kb on - strand, within Xcc-8004.2875.1 at 2796.258 kb on - strand, within Xcc-8004.2875.1 at 2796.301 kb on + strand, within Xcc-8004.2875.1 at 2796.301 kb on + strand, within Xcc-8004.2875.1 at 2796.301 kb on + strand, within Xcc-8004.2875.1 at 2796.301 kb on + strand, within Xcc-8004.2875.1 at 2796.301 kb on + strand, within Xcc-8004.2875.1 at 2796.301 kb on + strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.302 kb on - strand, within Xcc-8004.2875.1 at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.463 kb on + strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.464 kb on - strand at 2796.511 kb on - strand at 2796.560 kb on + strand at 2796.560 kb on + strand at 2796.560 kb on + strand at 2796.561 kb on - strand at 2796.561 kb on - strand at 2796.561 kb on - strand at 2796.561 kb on - strand at 2796.561 kb on - strand at 2796.616 kb on + strand, within Xcc-8004.2877.1 at 2796.647 kb on + strand, within Xcc-8004.2877.1 at 2796.647 kb on + strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1 at 2796.648 kb on - strand, within Xcc-8004.2877.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 2,792,774 - Xcc-8004.2873.1 0.89 -2.2 2,792,785 - Xcc-8004.2873.1 0.90 -0.5 2,793,079 + +0.4 2,793,079 + +0.3 2,793,295 + +0.3 2,793,464 - -0.3 2,793,464 - +0.6 2,793,464 - -1.0 2,793,498 - -2.1 2,793,718 + +0.5 2,793,718 + -0.1 2,793,718 + -1.3 2,793,718 + -0.6 2,793,755 + +1.6 2,793,755 + +0.5 2,793,756 - -0.4 2,793,756 - +0.4 2,793,756 - +0.4 2,793,797 - -0.8 2,793,797 - +0.0 2,793,797 - -0.1 2,793,797 - +1.8 2,793,985 + Xcc-8004.2874.1 0.17 -2.0 2,793,985 + Xcc-8004.2874.1 0.17 +1.0 2,793,985 + Xcc-8004.2874.1 0.17 -0.3 2,794,009 + Xcc-8004.2874.1 0.18 +0.6 2,794,009 + Xcc-8004.2874.1 0.18 +0.1 2,794,009 + Xcc-8004.2874.1 0.18 +0.3 2,794,009 + Xcc-8004.2874.1 0.18 -0.2 2,794,009 + Xcc-8004.2874.1 0.18 -0.3 2,794,009 + Xcc-8004.2874.1 0.18 -0.2 2,794,009 + Xcc-8004.2874.1 0.18 -0.7 2,794,010 - Xcc-8004.2874.1 0.18 +1.9 2,794,010 - Xcc-8004.2874.1 0.18 +0.9 2,794,010 - Xcc-8004.2874.1 0.18 +0.3 2,794,010 - Xcc-8004.2874.1 0.18 -0.2 2,794,010 - Xcc-8004.2874.1 0.18 -0.2 2,794,010 - Xcc-8004.2874.1 0.18 +0.9 2,794,235 - Xcc-8004.2874.1 0.28 -1.8 2,794,235 - Xcc-8004.2874.1 0.28 -1.7 2,794,235 - Xcc-8004.2874.1 0.28 -0.3 2,794,649 + Xcc-8004.2874.1 0.45 -0.6 2,794,650 - Xcc-8004.2874.1 0.45 -0.4 2,794,650 - Xcc-8004.2874.1 0.45 -1.5 2,794,658 - Xcc-8004.2874.1 0.46 -1.1 2,794,966 + Xcc-8004.2874.1 0.58 -0.3 2,794,966 + Xcc-8004.2874.1 0.58 -0.9 2,794,967 - Xcc-8004.2874.1 0.58 -2.1 2,795,040 + Xcc-8004.2874.1 0.62 -0.1 2,795,361 + Xcc-8004.2874.1 0.75 -0.3 2,795,632 + Xcc-8004.2874.1 0.86 -0.2 2,795,633 - Xcc-8004.2874.1 0.86 -1.1 2,795,633 - Xcc-8004.2874.1 0.86 +0.0 2,795,633 - Xcc-8004.2874.1 0.86 +0.0 2,795,953 + +0.1 2,795,953 + +0.3 2,795,953 + -0.7 2,795,953 + -1.1 2,795,954 - -1.2 2,795,954 - -1.0 2,795,954 - -2.3 2,796,020 + +0.5 2,796,021 - +0.0 2,796,021 - +0.4 2,796,021 - +0.9 2,796,029 - +0.4 2,796,075 + -0.0 2,796,075 + -0.9 2,796,076 - -0.4 2,796,095 - +0.5 2,796,095 - +0.4 2,796,195 - Xcc-8004.2875.1 0.30 +0.1 2,796,257 + Xcc-8004.2875.1 0.49 +2.0 2,796,257 + Xcc-8004.2875.1 0.49 +0.8 2,796,257 + Xcc-8004.2875.1 0.49 -0.7 2,796,257 + Xcc-8004.2875.1 0.49 +0.7 2,796,258 - Xcc-8004.2875.1 0.49 +0.1 2,796,258 - Xcc-8004.2875.1 0.49 -1.4 2,796,258 - Xcc-8004.2875.1 0.49 +1.3 2,796,258 - Xcc-8004.2875.1 0.49 +0.9 2,796,258 - Xcc-8004.2875.1 0.49 -0.3 2,796,258 - Xcc-8004.2875.1 0.49 +0.6 2,796,301 + Xcc-8004.2875.1 0.62 +1.6 2,796,301 + Xcc-8004.2875.1 0.62 -0.4 2,796,301 + Xcc-8004.2875.1 0.62 +1.2 2,796,301 + Xcc-8004.2875.1 0.62 +0.4 2,796,301 + Xcc-8004.2875.1 0.62 -0.2 2,796,301 + Xcc-8004.2875.1 0.62 -0.0 2,796,302 - Xcc-8004.2875.1 0.62 +0.5 2,796,302 - Xcc-8004.2875.1 0.62 -1.1 2,796,302 - Xcc-8004.2875.1 0.62 -0.1 2,796,302 - Xcc-8004.2875.1 0.62 -0.3 2,796,302 - Xcc-8004.2875.1 0.62 -0.8 2,796,302 - Xcc-8004.2875.1 0.62 -0.1 2,796,302 - Xcc-8004.2875.1 0.62 -0.3 2,796,302 - Xcc-8004.2875.1 0.62 -1.6 2,796,302 - Xcc-8004.2875.1 0.62 +1.6 2,796,302 - Xcc-8004.2875.1 0.62 -1.7 2,796,302 - Xcc-8004.2875.1 0.62 -0.0 2,796,302 - Xcc-8004.2875.1 0.62 +1.5 2,796,302 - Xcc-8004.2875.1 0.62 -1.7 2,796,302 - Xcc-8004.2875.1 0.62 -0.7 2,796,463 + -1.4 2,796,463 + -0.9 2,796,463 + +1.7 2,796,463 + +0.7 2,796,463 + +0.5 2,796,463 + -0.3 2,796,463 + -0.7 2,796,463 + +0.1 2,796,463 + -2.2 2,796,463 + -0.2 2,796,463 + +1.4 2,796,464 - +0.2 2,796,464 - +1.7 2,796,464 - -0.1 2,796,464 - +1.0 2,796,464 - -2.3 2,796,464 - -0.6 2,796,464 - +1.1 2,796,464 - +0.9 2,796,464 - +0.8 2,796,464 - +2.9 2,796,464 - +0.2 2,796,464 - -0.5 2,796,464 - -1.4 2,796,464 - +0.4 2,796,511 - -0.9 2,796,560 + +0.3 2,796,560 + +0.9 2,796,560 + +2.1 2,796,561 - +1.1 2,796,561 - +1.0 2,796,561 - -1.2 2,796,561 - -2.6 2,796,561 - -0.6 2,796,616 + Xcc-8004.2877.1 0.12 +1.1 2,796,647 + Xcc-8004.2877.1 0.14 -1.3 2,796,647 + Xcc-8004.2877.1 0.14 +1.3 2,796,648 - Xcc-8004.2877.1 0.14 -0.1 2,796,648 - Xcc-8004.2877.1 0.14 -0.1 2,796,648 - Xcc-8004.2877.1 0.14 +0.1 2,796,648 - Xcc-8004.2877.1 0.14 -0.4 2,796,648 - Xcc-8004.2877.1 0.14 -0.5 2,796,648 - Xcc-8004.2877.1 0.14 +0.7 2,796,648 - Xcc-8004.2877.1 0.14 -0.5 2,796,648 - Xcc-8004.2877.1 0.14 -0.3
Or see this region's nucleotide sequence