Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2669.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2666.1 and Xcc-8004.2668.1 are separated by 245 nucleotidesXcc-8004.2668.1 and Xcc-8004.2669.1 overlap by 16 nucleotidesXcc-8004.2669.1 and Xcc-8004.2670.1 are separated by 52 nucleotidesXcc-8004.2670.1 and Xcc-8004.2671.1 are separated by 90 nucleotides Xcc-8004.2666.1: Xcc-8004.2666.1 - putative; ORF located using Glimmer/Genemark, at 2,569,435 to 2,569,689 Xcc-8004.2666.1 Xcc-8004.2668.1: Xcc-8004.2668.1 - Transcriptional regulator, HxlR family, at 2,569,935 to 2,570,531 Xcc-8004.2668.1 Xcc-8004.2669.1: Xcc-8004.2669.1 - transport protein, at 2,570,516 to 2,571,802 Xcc-8004.2669.1 Xcc-8004.2670.1: Xcc-8004.2670.1 - Copper metallochaperone, bacterial analog of Cox17 protein, at 2,571,855 to 2,572,433 Xcc-8004.2670.1 Xcc-8004.2671.1: Xcc-8004.2671.1 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 2,572,524 to 2,573,135 Xcc-8004.2671.1 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2569.654 kb on + strand, within Xcc-8004.2666.1at 2569.677 kb on + strandat 2569.677 kb on + strandat 2569.677 kb on + strandat 2569.677 kb on + strandat 2569.678 kb on - strandat 2569.743 kb on + strandat 2569.743 kb on + strandat 2569.926 kb on + strandat 2569.936 kb on + strandat 2569.936 kb on + strandat 2569.997 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.025 kb on + strand, within Xcc-8004.2668.1at 2570.026 kb on - strand, within Xcc-8004.2668.1at 2570.026 kb on - strand, within Xcc-8004.2668.1at 2570.026 kb on - strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.116 kb on + strand, within Xcc-8004.2668.1at 2570.144 kb on - strand, within Xcc-8004.2668.1at 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.475 kb on + strandat 2570.476 kb on - strandat 2570.476 kb on - strandat 2570.476 kb on - strandat 2570.695 kb on + strand, within Xcc-8004.2669.1at 2570.696 kb on - strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.960 kb on + strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2570.961 kb on - strand, within Xcc-8004.2669.1at 2571.263 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.287 kb on + strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.288 kb on - strand, within Xcc-8004.2669.1at 2571.682 kb on + strandat 2571.683 kb on - strandat 2571.683 kb on - strandat 2571.683 kb on - strandat 2571.683 kb on - strandat 2571.683 kb on - strandat 2571.800 kb on + strandat 2572.416 kb on + strandat 2572.417 kb on - strandat 2572.417 kb on - strandat 2572.417 kb on - strandat 2572.419 kb on + strandat 2572.419 kb on + strandat 2572.448 kb on + strandat 2572.448 kb on + strandat 2572.449 kb on - strandat 2572.449 kb on - strandat 2572.449 kb on - strandat 2572.449 kb on - strandat 2572.449 kb on - strandat 2572.449 kb on - strandat 2572.525 kb on + strandat 2572.525 kb on + strandat 2572.526 kb on - strandat 2572.526 kb on - strandat 2572.526 kb on - strandat 2572.526 kb on - strandat 2572.600 kb on - strand, within Xcc-8004.2671.1at 2572.600 kb on - strand, within Xcc-8004.2671.1at 2572.600 kb on - strand, within Xcc-8004.2671.1at 2572.600 kb on - strand, within Xcc-8004.2671.1at 2572.649 kb on + strand, within Xcc-8004.2671.1at 2572.649 kb on + strand, within Xcc-8004.2671.1at 2572.650 kb on - strand, within Xcc-8004.2671.1at 2572.650 kb on - strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.651 kb on + strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.652 kb on - strand, within Xcc-8004.2671.1at 2572.678 kb on + strand, within Xcc-8004.2671.1at 2572.678 kb on + strand, within Xcc-8004.2671.1at 2572.678 kb on + strand, within Xcc-8004.2671.1at 2572.678 kb on + strand, within Xcc-8004.2671.1at 2572.678 kb on + strand, within Xcc-8004.2671.1at 2572.678 kb on + strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.679 kb on - strand, within Xcc-8004.2671.1at 2572.694 kb on + strand, within Xcc-8004.2671.1at 2572.694 kb on + strand, within Xcc-8004.2671.1at 2572.695 kb on - strand, within Xcc-8004.2671.1at 2572.695 kb on - strand, within Xcc-8004.2671.1at 2572.695 kb on - strand, within Xcc-8004.2671.1at 2572.695 kb on - strand, within Xcc-8004.2671.1at 2572.765 kb on + strand, within Xcc-8004.2671.1at 2572.765 kb on + strand, within Xcc-8004.2671.1at 2572.765 kb on + strand, within Xcc-8004.2671.1at 2572.765 kb on + strand, within Xcc-8004.2671.1at 2572.766 kb on - strand, within Xcc-8004.2671.1at 2572.766 kb on - strand, within Xcc-8004.2671.1at 2572.766 kb on - strand, within Xcc-8004.2671.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,569,654 + Xcc-8004.2666.1 0.86 -1.1
2,569,677 + +1.3
2,569,677 + -1.3
2,569,677 + +2.9
2,569,677 + +0.2
2,569,678 - +2.4
2,569,743 + -1.2
2,569,743 + -1.8
2,569,926 + -3.1
2,569,936 + +0.2
2,569,936 + +0.6
2,569,997 + Xcc-8004.2668.1 0.10 -0.7
2,570,025 + Xcc-8004.2668.1 0.15 -0.1
2,570,025 + Xcc-8004.2668.1 0.15 +1.1
2,570,025 + Xcc-8004.2668.1 0.15 -0.4
2,570,025 + Xcc-8004.2668.1 0.15 +0.5
2,570,026 - Xcc-8004.2668.1 0.15 -0.5
2,570,026 - Xcc-8004.2668.1 0.15 +0.2
2,570,026 - Xcc-8004.2668.1 0.15 +0.5
2,570,116 + Xcc-8004.2668.1 0.30 +0.6
2,570,116 + Xcc-8004.2668.1 0.30 +0.9
2,570,116 + Xcc-8004.2668.1 0.30 -0.0
2,570,116 + Xcc-8004.2668.1 0.30 +1.8
2,570,144 - Xcc-8004.2668.1 0.35 -1.4
2,570,475 + +0.5
2,570,475 + -0.0
2,570,475 + -2.9
2,570,475 + +0.7
2,570,475 + -0.9
2,570,475 + +0.8
2,570,475 + +0.2
2,570,475 + -0.1
2,570,475 + +1.1
2,570,476 - -0.3
2,570,476 - -0.8
2,570,476 - -2.1
2,570,695 + Xcc-8004.2669.1 0.14 +0.7
2,570,696 - Xcc-8004.2669.1 0.14 -0.4
2,570,960 + Xcc-8004.2669.1 0.34 -0.7
2,570,960 + Xcc-8004.2669.1 0.34 -0.5
2,570,960 + Xcc-8004.2669.1 0.34 +0.4
2,570,960 + Xcc-8004.2669.1 0.34 -0.0
2,570,960 + Xcc-8004.2669.1 0.34 +0.9
2,570,961 - Xcc-8004.2669.1 0.35 +0.4
2,570,961 - Xcc-8004.2669.1 0.35 +0.7
2,570,961 - Xcc-8004.2669.1 0.35 +1.5
2,570,961 - Xcc-8004.2669.1 0.35 -0.3
2,570,961 - Xcc-8004.2669.1 0.35 +0.5
2,571,263 + Xcc-8004.2669.1 0.58 -0.3
2,571,287 + Xcc-8004.2669.1 0.60 -2.0
2,571,287 + Xcc-8004.2669.1 0.60 -0.1
2,571,287 + Xcc-8004.2669.1 0.60 +0.4
2,571,287 + Xcc-8004.2669.1 0.60 +0.3
2,571,288 - Xcc-8004.2669.1 0.60 +1.3
2,571,288 - Xcc-8004.2669.1 0.60 +1.1
2,571,288 - Xcc-8004.2669.1 0.60 -1.0
2,571,288 - Xcc-8004.2669.1 0.60 -1.3
2,571,288 - Xcc-8004.2669.1 0.60 -0.5
2,571,288 - Xcc-8004.2669.1 0.60 +0.9
2,571,288 - Xcc-8004.2669.1 0.60 -0.8
2,571,288 - Xcc-8004.2669.1 0.60 +0.8
2,571,288 - Xcc-8004.2669.1 0.60 -0.8
2,571,288 - Xcc-8004.2669.1 0.60 -0.5
2,571,682 + -1.3
2,571,683 - -0.1
2,571,683 - -0.7
2,571,683 - -1.4
2,571,683 - +0.5
2,571,683 - -1.0
2,571,800 + +0.3
2,572,416 + +0.1
2,572,417 - +0.0
2,572,417 - +0.0
2,572,417 - -1.0
2,572,419 + -1.3
2,572,419 + +0.7
2,572,448 + -0.8
2,572,448 + +1.9
2,572,449 - -0.3
2,572,449 - +1.1
2,572,449 - -0.9
2,572,449 - -1.7
2,572,449 - +0.2
2,572,449 - +1.0
2,572,525 + +0.7
2,572,525 + -0.5
2,572,526 - -0.0
2,572,526 - -0.0
2,572,526 - -1.4
2,572,526 - -2.1
2,572,600 - Xcc-8004.2671.1 0.12 +0.7
2,572,600 - Xcc-8004.2671.1 0.12 -0.9
2,572,600 - Xcc-8004.2671.1 0.12 -1.1
2,572,600 - Xcc-8004.2671.1 0.12 +1.6
2,572,649 + Xcc-8004.2671.1 0.20 +0.1
2,572,649 + Xcc-8004.2671.1 0.20 +0.3
2,572,650 - Xcc-8004.2671.1 0.21 -0.2
2,572,650 - Xcc-8004.2671.1 0.21 -0.3
2,572,651 + Xcc-8004.2671.1 0.21 -1.9
2,572,651 + Xcc-8004.2671.1 0.21 +0.1
2,572,651 + Xcc-8004.2671.1 0.21 +0.0
2,572,651 + Xcc-8004.2671.1 0.21 +0.3
2,572,651 + Xcc-8004.2671.1 0.21 -2.3
2,572,651 + Xcc-8004.2671.1 0.21 -0.2
2,572,651 + Xcc-8004.2671.1 0.21 -0.2
2,572,651 + Xcc-8004.2671.1 0.21 +0.1
2,572,651 + Xcc-8004.2671.1 0.21 -1.1
2,572,651 + Xcc-8004.2671.1 0.21 -0.8
2,572,652 - Xcc-8004.2671.1 0.21 -1.1
2,572,652 - Xcc-8004.2671.1 0.21 -0.9
2,572,652 - Xcc-8004.2671.1 0.21 -0.0
2,572,652 - Xcc-8004.2671.1 0.21 -0.7
2,572,652 - Xcc-8004.2671.1 0.21 +0.1
2,572,652 - Xcc-8004.2671.1 0.21 -0.0
2,572,652 - Xcc-8004.2671.1 0.21 -0.8
2,572,652 - Xcc-8004.2671.1 0.21 -0.4
2,572,652 - Xcc-8004.2671.1 0.21 -0.5
2,572,652 - Xcc-8004.2671.1 0.21 -1.9
2,572,678 + Xcc-8004.2671.1 0.25 -1.4
2,572,678 + Xcc-8004.2671.1 0.25 -1.2
2,572,678 + Xcc-8004.2671.1 0.25 +0.1
2,572,678 + Xcc-8004.2671.1 0.25 +2.1
2,572,678 + Xcc-8004.2671.1 0.25 -0.8
2,572,678 + Xcc-8004.2671.1 0.25 +0.1
2,572,679 - Xcc-8004.2671.1 0.25 +0.1
2,572,679 - Xcc-8004.2671.1 0.25 +0.5
2,572,679 - Xcc-8004.2671.1 0.25 +1.4
2,572,679 - Xcc-8004.2671.1 0.25 +0.1
2,572,679 - Xcc-8004.2671.1 0.25 -0.3
2,572,679 - Xcc-8004.2671.1 0.25 -0.9
2,572,679 - Xcc-8004.2671.1 0.25 +0.9
2,572,679 - Xcc-8004.2671.1 0.25 +0.4
2,572,694 + Xcc-8004.2671.1 0.28 -0.1
2,572,694 + Xcc-8004.2671.1 0.28 -0.2
2,572,695 - Xcc-8004.2671.1 0.28 +3.2
2,572,695 - Xcc-8004.2671.1 0.28 -0.6
2,572,695 - Xcc-8004.2671.1 0.28 -2.1
2,572,695 - Xcc-8004.2671.1 0.28 +0.5
2,572,765 + Xcc-8004.2671.1 0.39 -0.1
2,572,765 + Xcc-8004.2671.1 0.39 -0.1
2,572,765 + Xcc-8004.2671.1 0.39 -0.4
2,572,765 + Xcc-8004.2671.1 0.39 -0.8
2,572,766 - Xcc-8004.2671.1 0.40 -1.4
2,572,766 - Xcc-8004.2671.1 0.40 -1.9
2,572,766 - Xcc-8004.2671.1 0.40 -1.3

Or see this region's nucleotide sequence