Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2405.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2403.1 and Xcc-8004.2404.1 are separated by 351 nucleotidesXcc-8004.2404.1 and Xcc-8004.2405.1 are separated by 100 nucleotidesXcc-8004.2405.1 and Xcc-8004.2406.1 are separated by 318 nucleotides Xcc-8004.2403.1: Xcc-8004.2403.1 - MFS transporter, at 2,347,547 to 2,349,178 Xcc-8004.2403.1 Xcc-8004.2404.1: Xcc-8004.2404.1 - hypothetical protein, at 2,349,530 to 2,349,886 Xcc-8004.2404.1 Xcc-8004.2405.1: Xcc-8004.2405.1 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 2,349,987 to 2,350,979 Xcc-8004.2405.1 Xcc-8004.2406.1: Xcc-8004.2406.1 - Manganese transport protein MntH, at 2,351,298 to 2,352,632 Xcc-8004.2406.1 Position (kb) 2349 2350 2351Strain fitness (log2 ratio) -1 0 1 2at 2349.000 kb on - strand, within Xcc-8004.2403.1at 2349.161 kb on - strandat 2349.161 kb on - strandat 2349.161 kb on - strandat 2349.172 kb on + strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.326 kb on - strandat 2349.370 kb on + strandat 2349.370 kb on + strandat 2349.381 kb on - strandat 2349.465 kb on + strandat 2349.531 kb on + strandat 2349.531 kb on + strandat 2349.532 kb on - strandat 2349.589 kb on + strand, within Xcc-8004.2404.1at 2349.589 kb on + strand, within Xcc-8004.2404.1at 2349.590 kb on - strand, within Xcc-8004.2404.1at 2349.595 kb on + strand, within Xcc-8004.2404.1at 2349.596 kb on - strand, within Xcc-8004.2404.1at 2349.596 kb on - strand, within Xcc-8004.2404.1at 2349.601 kb on + strand, within Xcc-8004.2404.1at 2349.602 kb on - strand, within Xcc-8004.2404.1at 2349.726 kb on + strand, within Xcc-8004.2404.1at 2349.793 kb on + strand, within Xcc-8004.2404.1at 2349.868 kb on + strandat 2349.868 kb on + strandat 2349.872 kb on + strandat 2349.940 kb on - strandat 2350.066 kb on + strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.067 kb on - strandat 2350.152 kb on + strand, within Xcc-8004.2405.1at 2350.152 kb on + strand, within Xcc-8004.2405.1at 2350.152 kb on + strand, within Xcc-8004.2405.1at 2350.153 kb on - strand, within Xcc-8004.2405.1at 2350.153 kb on - strand, within Xcc-8004.2405.1at 2350.196 kb on - strand, within Xcc-8004.2405.1at 2350.196 kb on - strand, within Xcc-8004.2405.1at 2350.229 kb on - strand, within Xcc-8004.2405.1at 2350.296 kb on - strand, within Xcc-8004.2405.1at 2350.296 kb on - strand, within Xcc-8004.2405.1at 2350.296 kb on - strand, within Xcc-8004.2405.1at 2350.342 kb on + strand, within Xcc-8004.2405.1at 2350.390 kb on - strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.498 kb on + strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.499 kb on - strand, within Xcc-8004.2405.1at 2350.591 kb on + strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.592 kb on - strand, within Xcc-8004.2405.1at 2350.768 kb on + strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.769 kb on - strand, within Xcc-8004.2405.1at 2350.817 kb on + strand, within Xcc-8004.2405.1at 2350.817 kb on + strand, within Xcc-8004.2405.1at 2350.818 kb on - strand, within Xcc-8004.2405.1at 2351.096 kb on - strandat 2351.096 kb on - strandat 2351.096 kb on - strandat 2351.194 kb on + strandat 2351.195 kb on - strandat 2351.195 kb on - strandat 2351.195 kb on - strandat 2351.195 kb on - strandat 2351.232 kb on + strandat 2351.232 kb on + strandat 2351.233 kb on - strandat 2351.233 kb on - strandat 2351.233 kb on - strandat 2351.515 kb on + strand, within Xcc-8004.2406.1at 2351.515 kb on + strand, within Xcc-8004.2406.1at 2351.516 kb on - strand, within Xcc-8004.2406.1at 2351.516 kb on - strand, within Xcc-8004.2406.1at 2351.516 kb on - strand, within Xcc-8004.2406.1at 2351.535 kb on + strand, within Xcc-8004.2406.1at 2351.535 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.926 kb on + strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.927 kb on - strand, within Xcc-8004.2406.1at 2351.933 kb on + strand, within Xcc-8004.2406.1at 2351.934 kb on - strand, within Xcc-8004.2406.1at 2351.975 kb on - strand, within Xcc-8004.2406.1at 2351.975 kb on - strand, within Xcc-8004.2406.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,349,000 - Xcc-8004.2403.1 0.89 -1.4
2,349,161 - -1.4
2,349,161 - -0.1
2,349,161 - +0.1
2,349,172 + +0.3
2,349,326 - -0.0
2,349,326 - +0.3
2,349,326 - +0.3
2,349,326 - -0.2
2,349,326 - +1.3
2,349,326 - +0.6
2,349,370 + +0.5
2,349,370 + -1.7
2,349,381 - -0.3
2,349,465 + +0.1
2,349,531 + +0.2
2,349,531 + +0.6
2,349,532 - -0.8
2,349,589 + Xcc-8004.2404.1 0.17 -0.9
2,349,589 + Xcc-8004.2404.1 0.17 +1.6
2,349,590 - Xcc-8004.2404.1 0.17 +0.6
2,349,595 + Xcc-8004.2404.1 0.18 +1.2
2,349,596 - Xcc-8004.2404.1 0.18 +0.6
2,349,596 - Xcc-8004.2404.1 0.18 -0.3
2,349,601 + Xcc-8004.2404.1 0.20 -0.9
2,349,602 - Xcc-8004.2404.1 0.20 -1.1
2,349,726 + Xcc-8004.2404.1 0.55 +0.8
2,349,793 + Xcc-8004.2404.1 0.74 +1.0
2,349,868 + +0.4
2,349,868 + -0.1
2,349,872 + +0.6
2,349,940 - +2.1
2,350,066 + +0.8
2,350,067 - +0.1
2,350,067 - -0.7
2,350,067 - -1.6
2,350,067 - +1.1
2,350,067 - +0.9
2,350,152 + Xcc-8004.2405.1 0.17 +1.3
2,350,152 + Xcc-8004.2405.1 0.17 +0.9
2,350,152 + Xcc-8004.2405.1 0.17 +1.9
2,350,153 - Xcc-8004.2405.1 0.17 +0.5
2,350,153 - Xcc-8004.2405.1 0.17 -0.1
2,350,196 - Xcc-8004.2405.1 0.21 -0.5
2,350,196 - Xcc-8004.2405.1 0.21 +0.1
2,350,229 - Xcc-8004.2405.1 0.24 -1.2
2,350,296 - Xcc-8004.2405.1 0.31 -0.8
2,350,296 - Xcc-8004.2405.1 0.31 -0.5
2,350,296 - Xcc-8004.2405.1 0.31 +0.8
2,350,342 + Xcc-8004.2405.1 0.36 -1.7
2,350,390 - Xcc-8004.2405.1 0.41 +0.3
2,350,498 + Xcc-8004.2405.1 0.51 +0.6
2,350,498 + Xcc-8004.2405.1 0.51 -0.2
2,350,498 + Xcc-8004.2405.1 0.51 +0.2
2,350,498 + Xcc-8004.2405.1 0.51 +0.4
2,350,498 + Xcc-8004.2405.1 0.51 +0.5
2,350,499 - Xcc-8004.2405.1 0.52 -1.4
2,350,499 - Xcc-8004.2405.1 0.52 +2.0
2,350,499 - Xcc-8004.2405.1 0.52 +2.0
2,350,499 - Xcc-8004.2405.1 0.52 +1.4
2,350,591 + Xcc-8004.2405.1 0.61 +1.9
2,350,592 - Xcc-8004.2405.1 0.61 +1.5
2,350,592 - Xcc-8004.2405.1 0.61 +1.4
2,350,592 - Xcc-8004.2405.1 0.61 +1.0
2,350,592 - Xcc-8004.2405.1 0.61 -1.2
2,350,592 - Xcc-8004.2405.1 0.61 -0.2
2,350,592 - Xcc-8004.2405.1 0.61 -0.3
2,350,592 - Xcc-8004.2405.1 0.61 +0.2
2,350,768 + Xcc-8004.2405.1 0.79 -1.2
2,350,769 - Xcc-8004.2405.1 0.79 -1.0
2,350,769 - Xcc-8004.2405.1 0.79 +0.3
2,350,769 - Xcc-8004.2405.1 0.79 -0.5
2,350,769 - Xcc-8004.2405.1 0.79 +0.2
2,350,769 - Xcc-8004.2405.1 0.79 -0.5
2,350,769 - Xcc-8004.2405.1 0.79 +1.0
2,350,817 + Xcc-8004.2405.1 0.84 -0.8
2,350,817 + Xcc-8004.2405.1 0.84 -0.2
2,350,818 - Xcc-8004.2405.1 0.84 +0.4
2,351,096 - -0.6
2,351,096 - -0.6
2,351,096 - -0.6
2,351,194 + -0.0
2,351,195 - +0.7
2,351,195 - -0.1
2,351,195 - -0.8
2,351,195 - -0.2
2,351,232 + -0.6
2,351,232 + +0.1
2,351,233 - -0.2
2,351,233 - -0.5
2,351,233 - +1.0
2,351,515 + Xcc-8004.2406.1 0.16 -0.7
2,351,515 + Xcc-8004.2406.1 0.16 +1.4
2,351,516 - Xcc-8004.2406.1 0.16 +0.0
2,351,516 - Xcc-8004.2406.1 0.16 +0.7
2,351,516 - Xcc-8004.2406.1 0.16 -0.6
2,351,535 + Xcc-8004.2406.1 0.18 +1.7
2,351,535 + Xcc-8004.2406.1 0.18 +1.0
2,351,926 + Xcc-8004.2406.1 0.47 -0.2
2,351,926 + Xcc-8004.2406.1 0.47 +0.0
2,351,926 + Xcc-8004.2406.1 0.47 +1.9
2,351,926 + Xcc-8004.2406.1 0.47 -0.2
2,351,927 - Xcc-8004.2406.1 0.47 +1.6
2,351,927 - Xcc-8004.2406.1 0.47 +0.9
2,351,927 - Xcc-8004.2406.1 0.47 -0.2
2,351,933 + Xcc-8004.2406.1 0.48 -0.5
2,351,934 - Xcc-8004.2406.1 0.48 -0.3
2,351,975 - Xcc-8004.2406.1 0.51 +0.2
2,351,975 - Xcc-8004.2406.1 0.51 +0.7

Or see this region's nucleotide sequence