Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1068.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1066.1 and Xcc-8004.1068.1 are separated by 424 nucleotidesXcc-8004.1068.1 and Xcc-8004.1069.1 are separated by 119 nucleotides Xcc-8004.1066.1: Xcc-8004.1066.1 - hypothetical protein, at 1,020,026 to 1,021,903 Xcc-8004.1066.1 Xcc-8004.1068.1: Xcc-8004.1068.1 - Transcriptional activator cadC, at 1,022,328 to 1,024,652 Xcc-8004.1068.1 Xcc-8004.1069.1: Xcc-8004.1069.1 - Transcriptional regulator, at 1,024,772 to 1,025,665 Xcc-8004.1069.1 Position (kb) 1022 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1021.376 kb on + strand, within Xcc-8004.1066.1at 1021.377 kb on - strand, within Xcc-8004.1066.1at 1021.377 kb on - strand, within Xcc-8004.1066.1at 1021.377 kb on - strand, within Xcc-8004.1066.1at 1021.378 kb on + strand, within Xcc-8004.1066.1at 1021.379 kb on - strand, within Xcc-8004.1066.1at 1021.379 kb on - strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.481 kb on + strand, within Xcc-8004.1066.1at 1021.482 kb on - strand, within Xcc-8004.1066.1at 1021.482 kb on - strand, within Xcc-8004.1066.1at 1021.482 kb on - strand, within Xcc-8004.1066.1at 1021.482 kb on - strand, within Xcc-8004.1066.1at 1021.482 kb on - strand, within Xcc-8004.1066.1at 1021.547 kb on + strand, within Xcc-8004.1066.1at 1021.548 kb on - strand, within Xcc-8004.1066.1at 1021.548 kb on - strand, within Xcc-8004.1066.1at 1021.622 kb on - strand, within Xcc-8004.1066.1at 1021.622 kb on - strand, within Xcc-8004.1066.1at 1021.622 kb on - strand, within Xcc-8004.1066.1at 1021.890 kb on - strandat 1021.890 kb on - strandat 1022.051 kb on + strandat 1022.051 kb on + strandat 1022.095 kb on + strandat 1022.096 kb on - strandat 1022.102 kb on + strandat 1022.102 kb on + strandat 1022.102 kb on + strandat 1022.103 kb on - strandat 1022.103 kb on - strandat 1022.103 kb on - strandat 1022.103 kb on - strandat 1022.154 kb on + strandat 1022.155 kb on - strandat 1022.155 kb on - strandat 1022.155 kb on - strandat 1022.171 kb on + strandat 1022.172 kb on - strandat 1022.172 kb on - strandat 1022.172 kb on - strandat 1022.172 kb on - strandat 1022.192 kb on + strandat 1022.192 kb on + strandat 1022.192 kb on + strandat 1022.192 kb on + strandat 1022.192 kb on + strandat 1022.192 kb on + strandat 1022.193 kb on - strandat 1022.778 kb on - strand, within Xcc-8004.1068.1at 1022.971 kb on - strand, within Xcc-8004.1068.1at 1023.042 kb on + strand, within Xcc-8004.1068.1at 1023.099 kb on - strand, within Xcc-8004.1068.1at 1023.106 kb on - strand, within Xcc-8004.1068.1at 1023.408 kb on + strand, within Xcc-8004.1068.1at 1023.435 kb on + strand, within Xcc-8004.1068.1at 1023.435 kb on + strand, within Xcc-8004.1068.1at 1023.435 kb on + strand, within Xcc-8004.1068.1at 1023.436 kb on - strand, within Xcc-8004.1068.1at 1023.436 kb on - strand, within Xcc-8004.1068.1at 1023.448 kb on - strand, within Xcc-8004.1068.1at 1023.659 kb on + strand, within Xcc-8004.1068.1at 1023.710 kb on + strand, within Xcc-8004.1068.1at 1023.711 kb on - strand, within Xcc-8004.1068.1at 1023.711 kb on - strand, within Xcc-8004.1068.1at 1023.711 kb on - strand, within Xcc-8004.1068.1at 1023.753 kb on + strand, within Xcc-8004.1068.1at 1023.754 kb on - strand, within Xcc-8004.1068.1at 1023.787 kb on - strand, within Xcc-8004.1068.1at 1023.889 kb on - strand, within Xcc-8004.1068.1at 1024.038 kb on + strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.039 kb on - strand, within Xcc-8004.1068.1at 1024.110 kb on + strand, within Xcc-8004.1068.1at 1024.110 kb on + strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.111 kb on - strand, within Xcc-8004.1068.1at 1024.179 kb on + strand, within Xcc-8004.1068.1at 1024.179 kb on + strand, within Xcc-8004.1068.1at 1024.180 kb on - strand, within Xcc-8004.1068.1at 1024.228 kb on + strand, within Xcc-8004.1068.1at 1024.228 kb on + strand, within Xcc-8004.1068.1at 1024.229 kb on - strand, within Xcc-8004.1068.1at 1024.407 kb on + strand, within Xcc-8004.1068.1at 1024.407 kb on + strand, within Xcc-8004.1068.1at 1024.407 kb on + strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.408 kb on - strand, within Xcc-8004.1068.1at 1024.491 kb on + strandat 1024.491 kb on + strandat 1024.491 kb on + strandat 1024.539 kb on + strandat 1024.539 kb on + strandat 1024.539 kb on + strandat 1024.539 kb on + strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.540 kb on - strandat 1024.660 kb on - strandat 1024.660 kb on - strandat 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.897 kb on + strand, within Xcc-8004.1069.1at 1024.932 kb on + strand, within Xcc-8004.1069.1at 1024.933 kb on - strand, within Xcc-8004.1069.1at 1025.095 kb on - strand, within Xcc-8004.1069.1at 1025.096 kb on + strand, within Xcc-8004.1069.1at 1025.097 kb on - strand, within Xcc-8004.1069.1at 1025.312 kb on + strand, within Xcc-8004.1069.1at 1025.313 kb on - strand, within Xcc-8004.1069.1at 1025.384 kb on + strand, within Xcc-8004.1069.1at 1025.384 kb on + strand, within Xcc-8004.1069.1at 1025.384 kb on + strand, within Xcc-8004.1069.1at 1025.385 kb on - strand, within Xcc-8004.1069.1at 1025.385 kb on - strand, within Xcc-8004.1069.1at 1025.385 kb on - strand, within Xcc-8004.1069.1at 1025.411 kb on + strand, within Xcc-8004.1069.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,021,376 + Xcc-8004.1066.1 0.72 -0.3
1,021,377 - Xcc-8004.1066.1 0.72 -0.6
1,021,377 - Xcc-8004.1066.1 0.72 -0.3
1,021,377 - Xcc-8004.1066.1 0.72 +0.2
1,021,378 + Xcc-8004.1066.1 0.72 +1.0
1,021,379 - Xcc-8004.1066.1 0.72 +0.9
1,021,379 - Xcc-8004.1066.1 0.72 -1.1
1,021,481 + Xcc-8004.1066.1 0.77 -2.1
1,021,481 + Xcc-8004.1066.1 0.77 -0.9
1,021,481 + Xcc-8004.1066.1 0.77 +0.6
1,021,481 + Xcc-8004.1066.1 0.77 -0.6
1,021,481 + Xcc-8004.1066.1 0.77 +0.4
1,021,481 + Xcc-8004.1066.1 0.77 -0.6
1,021,481 + Xcc-8004.1066.1 0.77 -1.3
1,021,482 - Xcc-8004.1066.1 0.78 -2.4
1,021,482 - Xcc-8004.1066.1 0.78 -1.2
1,021,482 - Xcc-8004.1066.1 0.78 +1.2
1,021,482 - Xcc-8004.1066.1 0.78 +1.6
1,021,482 - Xcc-8004.1066.1 0.78 -0.5
1,021,547 + Xcc-8004.1066.1 0.81 -0.4
1,021,548 - Xcc-8004.1066.1 0.81 -0.0
1,021,548 - Xcc-8004.1066.1 0.81 -0.1
1,021,622 - Xcc-8004.1066.1 0.85 +0.1
1,021,622 - Xcc-8004.1066.1 0.85 +0.1
1,021,622 - Xcc-8004.1066.1 0.85 -1.4
1,021,890 - +0.5
1,021,890 - -1.4
1,022,051 + +0.1
1,022,051 + +0.4
1,022,095 + +0.5
1,022,096 - -0.7
1,022,102 + +1.0
1,022,102 + +1.2
1,022,102 + -0.2
1,022,103 - -0.1
1,022,103 - +0.6
1,022,103 - +1.5
1,022,103 - -1.0
1,022,154 + +0.9
1,022,155 - +0.4
1,022,155 - +2.7
1,022,155 - -0.2
1,022,171 + +1.1
1,022,172 - +1.5
1,022,172 - -0.2
1,022,172 - -1.2
1,022,172 - +0.9
1,022,192 + -1.0
1,022,192 + +0.4
1,022,192 + -0.8
1,022,192 + +0.1
1,022,192 + -2.1
1,022,192 + -0.9
1,022,193 - +1.4
1,022,778 - Xcc-8004.1068.1 0.19 -0.0
1,022,971 - Xcc-8004.1068.1 0.28 -0.3
1,023,042 + Xcc-8004.1068.1 0.31 +2.1
1,023,099 - Xcc-8004.1068.1 0.33 +1.5
1,023,106 - Xcc-8004.1068.1 0.33 +0.6
1,023,408 + Xcc-8004.1068.1 0.46 -0.2
1,023,435 + Xcc-8004.1068.1 0.48 -0.1
1,023,435 + Xcc-8004.1068.1 0.48 -0.3
1,023,435 + Xcc-8004.1068.1 0.48 +0.2
1,023,436 - Xcc-8004.1068.1 0.48 +0.1
1,023,436 - Xcc-8004.1068.1 0.48 +0.4
1,023,448 - Xcc-8004.1068.1 0.48 +0.2
1,023,659 + Xcc-8004.1068.1 0.57 -1.4
1,023,710 + Xcc-8004.1068.1 0.59 -2.1
1,023,711 - Xcc-8004.1068.1 0.59 +1.7
1,023,711 - Xcc-8004.1068.1 0.59 +0.7
1,023,711 - Xcc-8004.1068.1 0.59 -0.1
1,023,753 + Xcc-8004.1068.1 0.61 +0.4
1,023,754 - Xcc-8004.1068.1 0.61 +2.9
1,023,787 - Xcc-8004.1068.1 0.63 +0.3
1,023,889 - Xcc-8004.1068.1 0.67 +1.1
1,024,038 + Xcc-8004.1068.1 0.74 -0.4
1,024,039 - Xcc-8004.1068.1 0.74 +1.1
1,024,039 - Xcc-8004.1068.1 0.74 -0.7
1,024,039 - Xcc-8004.1068.1 0.74 -0.8
1,024,039 - Xcc-8004.1068.1 0.74 -1.4
1,024,110 + Xcc-8004.1068.1 0.77 +2.1
1,024,110 + Xcc-8004.1068.1 0.77 -0.5
1,024,111 - Xcc-8004.1068.1 0.77 +1.1
1,024,111 - Xcc-8004.1068.1 0.77 +0.6
1,024,111 - Xcc-8004.1068.1 0.77 +0.6
1,024,111 - Xcc-8004.1068.1 0.77 +0.6
1,024,179 + Xcc-8004.1068.1 0.80 -0.0
1,024,179 + Xcc-8004.1068.1 0.80 +0.5
1,024,180 - Xcc-8004.1068.1 0.80 +2.8
1,024,228 + Xcc-8004.1068.1 0.82 -1.1
1,024,228 + Xcc-8004.1068.1 0.82 +0.6
1,024,229 - Xcc-8004.1068.1 0.82 +0.8
1,024,407 + Xcc-8004.1068.1 0.89 +1.0
1,024,407 + Xcc-8004.1068.1 0.89 +0.8
1,024,407 + Xcc-8004.1068.1 0.89 +2.2
1,024,408 - Xcc-8004.1068.1 0.89 +1.9
1,024,408 - Xcc-8004.1068.1 0.89 +1.1
1,024,408 - Xcc-8004.1068.1 0.89 -1.3
1,024,408 - Xcc-8004.1068.1 0.89 +0.6
1,024,408 - Xcc-8004.1068.1 0.89 +0.8
1,024,491 + +0.4
1,024,491 + -0.4
1,024,491 + -0.0
1,024,539 + +1.1
1,024,539 + +0.4
1,024,539 + +0.6
1,024,539 + -1.6
1,024,540 - +1.4
1,024,540 - +0.6
1,024,540 - +1.2
1,024,540 - +0.1
1,024,540 - +0.2
1,024,540 - +0.6
1,024,540 - +0.3
1,024,660 - -0.4
1,024,660 - -0.6
1,024,897 + Xcc-8004.1069.1 0.14 -0.1
1,024,897 + Xcc-8004.1069.1 0.14 -0.5
1,024,897 + Xcc-8004.1069.1 0.14 -0.9
1,024,897 + Xcc-8004.1069.1 0.14 -1.5
1,024,932 + Xcc-8004.1069.1 0.18 +0.1
1,024,933 - Xcc-8004.1069.1 0.18 +1.0
1,025,095 - Xcc-8004.1069.1 0.36 -0.1
1,025,096 + Xcc-8004.1069.1 0.36 +1.2
1,025,097 - Xcc-8004.1069.1 0.36 +0.5
1,025,312 + Xcc-8004.1069.1 0.60 +0.6
1,025,313 - Xcc-8004.1069.1 0.61 +0.7
1,025,384 + Xcc-8004.1069.1 0.68 -0.0
1,025,384 + Xcc-8004.1069.1 0.68 -1.9
1,025,384 + Xcc-8004.1069.1 0.68 +1.6
1,025,385 - Xcc-8004.1069.1 0.69 +1.8
1,025,385 - Xcc-8004.1069.1 0.69 +1.4
1,025,385 - Xcc-8004.1069.1 0.69 +0.9
1,025,411 + Xcc-8004.1069.1 0.71 +1.2

Or see this region's nucleotide sequence