Strain Fitness in Pantoea sp. MT58 around IAI47_19935

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19925 and IAI47_19930 are separated by 35 nucleotidesIAI47_19930 and IAI47_19935 are separated by 72 nucleotidesIAI47_19935 and IAI47_19940 are separated by 674 nucleotides IAI47_19925: IAI47_19925 - TcfC E-set like domain-containing protein, at 210,826 to 213,279 _19925 IAI47_19930: IAI47_19930 - adhesin, at 213,315 to 213,848 _19930 IAI47_19935: IAI47_19935 - hypothetical protein, at 213,921 to 214,664 _19935 IAI47_19940: IAI47_19940 - hypothetical protein, at 215,339 to 215,608 _19940 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2 3at 212.980 kb on + strand, within IAI47_19925at 212.980 kb on + strand, within IAI47_19925at 212.992 kb on + strand, within IAI47_19925at 213.036 kb on + strandat 213.036 kb on + strandat 213.036 kb on + strandat 213.052 kb on - strandat 213.120 kb on + strandat 213.121 kb on - strandat 213.140 kb on + strandat 213.171 kb on + strandat 213.172 kb on - strandat 213.172 kb on - strandat 213.190 kb on - strandat 213.206 kb on - strandat 213.208 kb on - strandat 213.208 kb on - strandat 213.208 kb on - strandat 213.223 kb on - strandat 213.309 kb on + strandat 213.309 kb on + strandat 213.310 kb on - strandat 213.310 kb on - strandat 213.314 kb on - strandat 213.383 kb on + strand, within IAI47_19930at 213.384 kb on - strand, within IAI47_19930at 213.384 kb on - strand, within IAI47_19930at 213.455 kb on + strand, within IAI47_19930at 213.456 kb on - strand, within IAI47_19930at 213.467 kb on + strand, within IAI47_19930at 213.486 kb on + strand, within IAI47_19930at 213.486 kb on + strand, within IAI47_19930at 213.494 kb on + strand, within IAI47_19930at 213.494 kb on + strand, within IAI47_19930at 213.494 kb on + strand, within IAI47_19930at 213.495 kb on - strand, within IAI47_19930at 213.515 kb on + strand, within IAI47_19930at 213.515 kb on + strand, within IAI47_19930at 213.530 kb on + strand, within IAI47_19930at 213.530 kb on + strand, within IAI47_19930at 213.531 kb on - strand, within IAI47_19930at 213.531 kb on - strand, within IAI47_19930at 213.534 kb on + strand, within IAI47_19930at 213.534 kb on + strand, within IAI47_19930at 213.534 kb on + strand, within IAI47_19930at 213.652 kb on + strand, within IAI47_19930at 213.659 kb on + strand, within IAI47_19930at 213.732 kb on + strand, within IAI47_19930at 213.743 kb on + strand, within IAI47_19930at 213.809 kb on + strandat 214.061 kb on + strand, within IAI47_19935at 214.116 kb on + strand, within IAI47_19935at 214.151 kb on + strand, within IAI47_19935at 214.152 kb on - strand, within IAI47_19935at 214.152 kb on - strand, within IAI47_19935at 214.208 kb on + strand, within IAI47_19935at 214.289 kb on + strand, within IAI47_19935at 214.289 kb on + strand, within IAI47_19935at 214.290 kb on - strand, within IAI47_19935at 214.379 kb on + strand, within IAI47_19935at 214.379 kb on + strand, within IAI47_19935at 214.379 kb on + strand, within IAI47_19935at 214.382 kb on + strand, within IAI47_19935at 214.403 kb on + strand, within IAI47_19935at 214.403 kb on + strand, within IAI47_19935at 214.532 kb on - strand, within IAI47_19935at 214.576 kb on + strand, within IAI47_19935at 214.576 kb on + strand, within IAI47_19935at 214.576 kb on + strand, within IAI47_19935at 214.577 kb on - strand, within IAI47_19935at 214.688 kb on + strandat 214.749 kb on + strandat 214.822 kb on + strandat 214.856 kb on - strandat 214.879 kb on + strandat 214.884 kb on - strandat 214.992 kb on - strandat 214.999 kb on - strandat 215.036 kb on + strandat 215.055 kb on - strandat 215.055 kb on - strandat 215.055 kb on - strandat 215.055 kb on - strandat 215.097 kb on + strandat 215.123 kb on + strandat 215.123 kb on + strandat 215.123 kb on + strandat 215.124 kb on - strandat 215.124 kb on - strandat 215.125 kb on + strandat 215.126 kb on - strandat 215.129 kb on + strandat 215.130 kb on - strandat 215.131 kb on + strandat 215.131 kb on + strandat 215.132 kb on - strandat 215.132 kb on - strandat 215.142 kb on + strandat 215.204 kb on + strandat 215.217 kb on - strandat 215.231 kb on - strandat 215.358 kb on + strandat 215.359 kb on - strandat 215.447 kb on + strand, within IAI47_19940at 215.457 kb on + strand, within IAI47_19940at 215.457 kb on + strand, within IAI47_19940at 215.457 kb on + strand, within IAI47_19940at 215.457 kb on + strand, within IAI47_19940at 215.458 kb on - strand, within IAI47_19940at 215.458 kb on - strand, within IAI47_19940at 215.495 kb on - strand, within IAI47_19940at 215.534 kb on + strand, within IAI47_19940at 215.535 kb on - strand, within IAI47_19940at 215.549 kb on + strand, within IAI47_19940at 215.610 kb on + strandat 215.611 kb on - strandat 215.611 kb on - strandat 215.625 kb on + strandat 215.625 kb on + strandat 215.626 kb on - strandat 215.626 kb on - strandat 215.657 kb on + strandat 215.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
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212,980 + IAI47_19925 0.88 +0.1
212,980 + IAI47_19925 0.88 +0.4
212,992 + IAI47_19925 0.88 +0.9
213,036 + +1.6
213,036 + -1.1
213,036 + +0.9
213,052 - +0.3
213,120 + +0.5
213,121 - -0.3
213,140 + +0.3
213,171 + +3.5
213,172 - +0.4
213,172 - +0.1
213,190 - +0.3
213,206 - -0.3
213,208 - -0.8
213,208 - -1.1
213,208 - +0.1
213,223 - -0.2
213,309 + -0.3
213,309 + +1.1
213,310 - +1.0
213,310 - +0.1
213,314 - -0.1
213,383 + IAI47_19930 0.13 -1.5
213,384 - IAI47_19930 0.13 +2.4
213,384 - IAI47_19930 0.13 +1.0
213,455 + IAI47_19930 0.26 -0.3
213,456 - IAI47_19930 0.26 +1.3
213,467 + IAI47_19930 0.28 +2.2
213,486 + IAI47_19930 0.32 -1.6
213,486 + IAI47_19930 0.32 +0.4
213,494 + IAI47_19930 0.34 +0.2
213,494 + IAI47_19930 0.34 +0.7
213,494 + IAI47_19930 0.34 -0.8
213,495 - IAI47_19930 0.34 +1.7
213,515 + IAI47_19930 0.37 +1.2
213,515 + IAI47_19930 0.37 -1.2
213,530 + IAI47_19930 0.40 +1.4
213,530 + IAI47_19930 0.40 -0.1
213,531 - IAI47_19930 0.40 -2.1
213,531 - IAI47_19930 0.40 -1.6
213,534 + IAI47_19930 0.41 +0.2
213,534 + IAI47_19930 0.41 -1.1
213,534 + IAI47_19930 0.41 -0.7
213,652 + IAI47_19930 0.63 +1.5
213,659 + IAI47_19930 0.64 -0.1
213,732 + IAI47_19930 0.78 +0.5
213,743 + IAI47_19930 0.80 -1.6
213,809 + -1.2
214,061 + IAI47_19935 0.19 +0.1
214,116 + IAI47_19935 0.26 +0.0
214,151 + IAI47_19935 0.31 -1.4
214,152 - IAI47_19935 0.31 +0.1
214,152 - IAI47_19935 0.31 -0.4
214,208 + IAI47_19935 0.39 -0.2
214,289 + IAI47_19935 0.49 -0.1
214,289 + IAI47_19935 0.49 +0.1
214,290 - IAI47_19935 0.50 -0.1
214,379 + IAI47_19935 0.62 -0.7
214,379 + IAI47_19935 0.62 -0.7
214,379 + IAI47_19935 0.62 -0.2
214,382 + IAI47_19935 0.62 +0.2
214,403 + IAI47_19935 0.65 +1.1
214,403 + IAI47_19935 0.65 -1.8
214,532 - IAI47_19935 0.82 -0.8
214,576 + IAI47_19935 0.88 +1.2
214,576 + IAI47_19935 0.88 -1.1
214,576 + IAI47_19935 0.88 +0.2
214,577 - IAI47_19935 0.88 -0.3
214,688 + -0.7
214,749 + -0.5
214,822 + +0.6
214,856 - -1.3
214,879 + +0.4
214,884 - -0.3
214,992 - -0.7
214,999 - +1.1
215,036 + -0.1
215,055 - -0.7
215,055 - -0.3
215,055 - +0.5
215,055 - -0.6
215,097 + -0.9
215,123 + -1.0
215,123 + +0.1
215,123 + +0.9
215,124 - -0.8
215,124 - -1.0
215,125 + +1.2
215,126 - -0.2
215,129 + -0.4
215,130 - +1.6
215,131 + +0.0
215,131 + -1.1
215,132 - -0.6
215,132 - -0.5
215,142 + -0.3
215,204 + -0.4
215,217 - -0.2
215,231 - -0.6
215,358 + -1.8
215,359 - +0.4
215,447 + IAI47_19940 0.40 +0.9
215,457 + IAI47_19940 0.44 -0.1
215,457 + IAI47_19940 0.44 -0.6
215,457 + IAI47_19940 0.44 +1.8
215,457 + IAI47_19940 0.44 +1.5
215,458 - IAI47_19940 0.44 -0.8
215,458 - IAI47_19940 0.44 +1.1
215,495 - IAI47_19940 0.58 +1.1
215,534 + IAI47_19940 0.72 +0.2
215,535 - IAI47_19940 0.73 -0.9
215,549 + IAI47_19940 0.78 +0.6
215,610 + +0.3
215,611 - -0.9
215,611 - -0.3
215,625 + +0.9
215,625 + -0.1
215,626 - -0.2
215,626 - -0.8
215,657 + -0.6
215,657 + +0.2

Or see this region's nucleotide sequence