Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19460 and IAI47_19465 are separated by 21 nucleotides IAI47_19465 and IAI47_19470 are separated by 91 nucleotides
IAI47_19460: IAI47_19460 - LysR family transcriptional regulator, at 120,986 to 121,882
_19460
IAI47_19465: IAI47_19465 - VOC family protein, at 121,904 to 122,323
_19465
IAI47_19470: IAI47_19470 - GABA permease, at 122,415 to 123,830
_19470
Position (kb) 121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 120.908 kb on + strand at 120.909 kb on - strand at 120.913 kb on + strand at 120.914 kb on - strand at 120.914 kb on - strand at 120.914 kb on - strand at 121.036 kb on + strand at 121.091 kb on + strand, within IAI47_19460 at 121.331 kb on + strand, within IAI47_19460 at 121.360 kb on + strand, within IAI47_19460 at 121.361 kb on - strand, within IAI47_19460 at 121.361 kb on - strand, within IAI47_19460 at 121.363 kb on + strand, within IAI47_19460 at 121.363 kb on + strand, within IAI47_19460 at 121.363 kb on + strand, within IAI47_19460 at 121.363 kb on + strand, within IAI47_19460 at 121.364 kb on - strand, within IAI47_19460 at 121.364 kb on - strand, within IAI47_19460 at 121.394 kb on - strand, within IAI47_19460 at 121.394 kb on - strand, within IAI47_19460 at 121.411 kb on + strand, within IAI47_19460 at 121.411 kb on + strand, within IAI47_19460 at 121.411 kb on + strand, within IAI47_19460 at 121.412 kb on - strand, within IAI47_19460 at 121.412 kb on - strand, within IAI47_19460 at 121.414 kb on + strand, within IAI47_19460 at 121.415 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.541 kb on - strand, within IAI47_19460 at 121.551 kb on - strand, within IAI47_19460 at 121.551 kb on - strand, within IAI47_19460 at 121.553 kb on + strand, within IAI47_19460 at 121.553 kb on + strand, within IAI47_19460 at 121.554 kb on - strand, within IAI47_19460 at 121.650 kb on + strand, within IAI47_19460 at 121.650 kb on + strand, within IAI47_19460 at 121.687 kb on - strand, within IAI47_19460 at 121.696 kb on - strand, within IAI47_19460 at 121.696 kb on - strand, within IAI47_19460 at 121.732 kb on + strand, within IAI47_19460 at 121.747 kb on - strand, within IAI47_19460 at 121.747 kb on - strand, within IAI47_19460 at 121.757 kb on + strand, within IAI47_19460 at 121.757 kb on + strand, within IAI47_19460 at 121.757 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.790 kb on + strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.791 kb on - strand, within IAI47_19460 at 121.853 kb on - strand at 121.853 kb on - strand at 121.853 kb on - strand at 121.881 kb on - strand at 121.881 kb on - strand at 121.903 kb on + strand at 121.913 kb on - strand at 121.913 kb on - strand at 121.913 kb on - strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.921 kb on + strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.922 kb on - strand at 121.925 kb on + strand at 121.925 kb on + strand at 121.925 kb on + strand at 121.925 kb on + strand at 121.926 kb on - strand at 121.926 kb on - strand at 121.985 kb on + strand, within IAI47_19465 at 121.986 kb on - strand, within IAI47_19465 at 121.986 kb on - strand, within IAI47_19465 at 121.986 kb on - strand, within IAI47_19465 at 122.010 kb on + strand, within IAI47_19465 at 122.010 kb on + strand, within IAI47_19465 at 122.010 kb on + strand, within IAI47_19465 at 122.011 kb on - strand, within IAI47_19465 at 122.042 kb on + strand, within IAI47_19465 at 122.042 kb on + strand, within IAI47_19465 at 122.043 kb on - strand, within IAI47_19465 at 122.043 kb on - strand, within IAI47_19465 at 122.048 kb on - strand, within IAI47_19465 at 122.051 kb on + strand, within IAI47_19465 at 122.137 kb on + strand, within IAI47_19465 at 122.137 kb on + strand, within IAI47_19465 at 122.138 kb on - strand, within IAI47_19465 at 122.138 kb on - strand, within IAI47_19465 at 122.172 kb on + strand, within IAI47_19465 at 122.172 kb on + strand, within IAI47_19465 at 122.172 kb on + strand, within IAI47_19465 at 122.172 kb on + strand, within IAI47_19465 at 122.172 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.231 kb on + strand, within IAI47_19465 at 122.232 kb on - strand, within IAI47_19465 at 122.232 kb on - strand, within IAI47_19465 at 122.232 kb on - strand, within IAI47_19465 at 122.291 kb on + strand at 122.312 kb on + strand at 122.312 kb on + strand at 122.313 kb on - strand at 122.313 kb on - strand at 122.322 kb on - strand at 122.322 kb on - strand at 122.345 kb on + strand at 122.347 kb on + strand at 122.347 kb on + strand at 122.347 kb on + strand at 122.348 kb on - strand at 122.348 kb on - strand at 122.392 kb on + strand at 122.399 kb on + strand at 122.399 kb on + strand at 122.400 kb on - strand at 122.406 kb on + strand at 122.416 kb on + strand at 122.416 kb on + strand at 122.417 kb on - strand at 122.417 kb on - strand at 122.417 kb on - strand at 122.417 kb on - strand at 122.417 kb on - strand at 122.442 kb on - strand at 122.446 kb on + strand at 122.447 kb on - strand at 122.474 kb on + strand at 122.564 kb on + strand, within IAI47_19470 at 122.565 kb on - strand, within IAI47_19470 at 122.565 kb on - strand, within IAI47_19470 at 122.565 kb on - strand, within IAI47_19470 at 122.565 kb on - strand, within IAI47_19470 at 122.567 kb on + strand, within IAI47_19470 at 122.567 kb on + strand, within IAI47_19470 at 122.568 kb on - strand, within IAI47_19470 at 122.568 kb on - strand, within IAI47_19470 at 122.568 kb on - strand, within IAI47_19470 at 122.594 kb on + strand, within IAI47_19470 at 122.594 kb on + strand, within IAI47_19470 at 122.594 kb on + strand, within IAI47_19470 at 122.619 kb on + strand, within IAI47_19470 at 122.620 kb on - strand, within IAI47_19470 at 122.632 kb on + strand, within IAI47_19470 at 122.633 kb on - strand, within IAI47_19470 at 122.701 kb on + strand, within IAI47_19470 at 122.701 kb on + strand, within IAI47_19470 at 122.802 kb on - strand, within IAI47_19470 at 122.812 kb on - strand, within IAI47_19470 at 122.812 kb on - strand, within IAI47_19470 at 122.871 kb on - strand, within IAI47_19470 at 122.887 kb on + strand, within IAI47_19470 at 122.888 kb on - strand, within IAI47_19470 at 122.888 kb on - strand, within IAI47_19470 at 122.894 kb on + strand, within IAI47_19470 at 122.894 kb on + strand, within IAI47_19470 at 122.895 kb on - strand, within IAI47_19470 at 122.906 kb on + strand, within IAI47_19470 at 122.906 kb on + strand, within IAI47_19470 at 122.906 kb on + strand, within IAI47_19470 at 122.906 kb on + strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.994 kb on + strand, within IAI47_19470 at 122.995 kb on - strand, within IAI47_19470 at 122.995 kb on - strand, within IAI47_19470 at 123.045 kb on + strand, within IAI47_19470 at 123.079 kb on + strand, within IAI47_19470 at 123.079 kb on + strand, within IAI47_19470 at 123.080 kb on - strand, within IAI47_19470 at 123.092 kb on + strand, within IAI47_19470 at 123.101 kb on + strand, within IAI47_19470 at 123.159 kb on + strand, within IAI47_19470 at 123.183 kb on - strand, within IAI47_19470 at 123.183 kb on - strand, within IAI47_19470 at 123.239 kb on + strand, within IAI47_19470 at 123.256 kb on + strand, within IAI47_19470 at 123.256 kb on + strand, within IAI47_19470 at 123.257 kb on - strand, within IAI47_19470 at 123.281 kb on + strand, within IAI47_19470 at 123.282 kb on - strand, within IAI47_19470 at 123.282 kb on - strand, within IAI47_19470 at 123.303 kb on + strand, within IAI47_19470
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 remove 120,908 + +0.3 120,909 - -0.4 120,913 + +0.4 120,914 - +0.4 120,914 - +0.9 120,914 - -0.7 121,036 + +0.9 121,091 + IAI47_19460 0.12 +0.0 121,331 + IAI47_19460 0.38 +0.5 121,360 + IAI47_19460 0.42 +0.8 121,361 - IAI47_19460 0.42 -0.6 121,361 - IAI47_19460 0.42 +0.8 121,363 + IAI47_19460 0.42 +1.4 121,363 + IAI47_19460 0.42 +0.6 121,363 + IAI47_19460 0.42 -0.2 121,363 + IAI47_19460 0.42 -0.1 121,364 - IAI47_19460 0.42 +0.2 121,364 - IAI47_19460 0.42 +0.7 121,394 - IAI47_19460 0.45 -0.2 121,394 - IAI47_19460 0.45 -0.7 121,411 + IAI47_19460 0.47 +0.4 121,411 + IAI47_19460 0.47 +1.9 121,411 + IAI47_19460 0.47 +1.9 121,412 - IAI47_19460 0.47 +0.9 121,412 - IAI47_19460 0.47 +1.0 121,414 + IAI47_19460 0.48 +0.8 121,415 - IAI47_19460 0.48 +0.2 121,541 - IAI47_19460 0.62 -0.6 121,541 - IAI47_19460 0.62 -0.9 121,541 - IAI47_19460 0.62 +0.7 121,541 - IAI47_19460 0.62 +0.7 121,541 - IAI47_19460 0.62 -0.7 121,541 - IAI47_19460 0.62 -0.7 121,541 - IAI47_19460 0.62 +2.1 121,551 - IAI47_19460 0.63 +1.2 121,551 - IAI47_19460 0.63 +1.6 121,553 + IAI47_19460 0.63 -0.1 121,553 + IAI47_19460 0.63 -0.3 121,554 - IAI47_19460 0.63 -1.0 121,650 + IAI47_19460 0.74 +0.6 121,650 + IAI47_19460 0.74 -0.3 121,687 - IAI47_19460 0.78 -1.6 121,696 - IAI47_19460 0.79 +1.1 121,696 - IAI47_19460 0.79 +0.2 121,732 + IAI47_19460 0.83 -0.9 121,747 - IAI47_19460 0.85 -1.5 121,747 - IAI47_19460 0.85 +0.0 121,757 + IAI47_19460 0.86 +0.8 121,757 + IAI47_19460 0.86 +1.2 121,757 + IAI47_19460 0.86 -1.3 121,790 + IAI47_19460 0.90 +1.0 121,790 + IAI47_19460 0.90 +2.0 121,790 + IAI47_19460 0.90 +2.3 121,790 + IAI47_19460 0.90 +1.3 121,790 + IAI47_19460 0.90 +1.9 121,790 + IAI47_19460 0.90 -0.3 121,790 + IAI47_19460 0.90 -1.3 121,790 + IAI47_19460 0.90 -1.7 121,790 + IAI47_19460 0.90 -0.0 121,790 + IAI47_19460 0.90 +1.1 121,791 - IAI47_19460 0.90 +0.6 121,791 - IAI47_19460 0.90 +1.1 121,791 - IAI47_19460 0.90 +0.9 121,791 - IAI47_19460 0.90 +1.7 121,791 - IAI47_19460 0.90 +0.9 121,791 - IAI47_19460 0.90 -1.6 121,791 - IAI47_19460 0.90 -0.4 121,791 - IAI47_19460 0.90 +0.3 121,853 - +0.4 121,853 - -1.3 121,853 - -1.1 121,881 - +0.5 121,881 - +0.6 121,903 + -0.3 121,913 - -0.7 121,913 - -0.9 121,913 - -0.6 121,921 + +0.9 121,921 + -0.5 121,921 + +1.0 121,921 + -0.1 121,921 + +0.9 121,921 + +0.4 121,921 + -0.6 121,921 + +0.3 121,921 + -0.9 121,921 + +1.5 121,921 + +1.8 121,921 + +1.9 121,921 + -0.1 121,922 - -1.2 121,922 - -0.6 121,922 - +0.5 121,922 - +2.1 121,922 - -0.4 121,922 - +2.5 121,922 - -0.3 121,922 - +0.0 121,925 + +1.0 121,925 + -0.9 121,925 + -0.5 121,925 + -0.9 121,926 - -1.0 121,926 - +1.5 121,985 + IAI47_19465 0.19 -1.2 121,986 - IAI47_19465 0.20 +0.1 121,986 - IAI47_19465 0.20 -1.0 121,986 - IAI47_19465 0.20 +1.1 122,010 + IAI47_19465 0.25 +1.4 122,010 + IAI47_19465 0.25 +0.9 122,010 + IAI47_19465 0.25 +0.0 122,011 - IAI47_19465 0.25 -1.9 122,042 + IAI47_19465 0.33 +0.6 122,042 + IAI47_19465 0.33 -2.1 122,043 - IAI47_19465 0.33 -0.2 122,043 - IAI47_19465 0.33 -1.3 122,048 - IAI47_19465 0.34 -1.1 122,051 + IAI47_19465 0.35 +1.5 122,137 + IAI47_19465 0.55 +0.9 122,137 + IAI47_19465 0.55 +1.2 122,138 - IAI47_19465 0.56 +0.0 122,138 - IAI47_19465 0.56 -0.6 122,172 + IAI47_19465 0.64 +0.0 122,172 + IAI47_19465 0.64 +1.9 122,172 + IAI47_19465 0.64 +1.0 122,172 + IAI47_19465 0.64 +0.6 122,172 + IAI47_19465 0.64 +0.4 122,231 + IAI47_19465 0.78 +0.1 122,231 + IAI47_19465 0.78 -0.6 122,231 + IAI47_19465 0.78 +1.4 122,231 + IAI47_19465 0.78 +1.3 122,231 + IAI47_19465 0.78 -0.2 122,231 + IAI47_19465 0.78 +0.0 122,231 + IAI47_19465 0.78 -0.4 122,232 - IAI47_19465 0.78 -1.1 122,232 - IAI47_19465 0.78 +0.7 122,232 - IAI47_19465 0.78 -0.4 122,291 + -0.4 122,312 + +0.5 122,312 + +0.8 122,313 - +1.7 122,313 - +0.3 122,322 - +0.3 122,322 - -0.9 122,345 + +2.1 122,347 + +0.5 122,347 + -0.3 122,347 + +1.0 122,348 - -1.3 122,348 - -1.1 122,392 + +1.7 122,399 + +0.9 122,399 + -1.2 122,400 - +1.2 122,406 + -0.2 122,416 + -0.2 122,416 + +1.1 122,417 - +0.2 122,417 - +0.7 122,417 - +0.5 122,417 - -0.1 122,417 - +1.4 122,442 - +1.0 122,446 + +0.7 122,447 - +0.2 122,474 + +0.8 122,564 + IAI47_19470 0.11 -0.6 122,565 - IAI47_19470 0.11 -1.1 122,565 - IAI47_19470 0.11 +0.2 122,565 - IAI47_19470 0.11 +0.3 122,565 - IAI47_19470 0.11 +0.4 122,567 + IAI47_19470 0.11 +2.5 122,567 + IAI47_19470 0.11 -0.2 122,568 - IAI47_19470 0.11 -1.1 122,568 - IAI47_19470 0.11 -0.3 122,568 - IAI47_19470 0.11 +0.5 122,594 + IAI47_19470 0.13 +0.5 122,594 + IAI47_19470 0.13 -0.7 122,594 + IAI47_19470 0.13 +0.3 122,619 + IAI47_19470 0.14 +0.5 122,620 - IAI47_19470 0.14 +1.5 122,632 + IAI47_19470 0.15 +0.3 122,633 - IAI47_19470 0.15 +0.4 122,701 + IAI47_19470 0.20 -0.8 122,701 + IAI47_19470 0.20 -1.3 122,802 - IAI47_19470 0.27 -0.5 122,812 - IAI47_19470 0.28 -0.3 122,812 - IAI47_19470 0.28 -0.8 122,871 - IAI47_19470 0.32 -0.1 122,887 + IAI47_19470 0.33 +0.4 122,888 - IAI47_19470 0.33 +0.1 122,888 - IAI47_19470 0.33 -0.7 122,894 + IAI47_19470 0.34 +0.3 122,894 + IAI47_19470 0.34 +1.1 122,895 - IAI47_19470 0.34 +0.5 122,906 + IAI47_19470 0.35 -0.5 122,906 + IAI47_19470 0.35 -0.9 122,906 + IAI47_19470 0.35 -1.3 122,906 + IAI47_19470 0.35 -0.9 122,907 - IAI47_19470 0.35 -1.3 122,907 - IAI47_19470 0.35 +1.6 122,907 - IAI47_19470 0.35 -1.7 122,907 - IAI47_19470 0.35 +2.2 122,908 + IAI47_19470 0.35 +1.5 122,908 + IAI47_19470 0.35 -1.4 122,908 + IAI47_19470 0.35 -0.5 122,909 - IAI47_19470 0.35 +0.3 122,909 - IAI47_19470 0.35 -0.7 122,909 - IAI47_19470 0.35 +0.9 122,909 - IAI47_19470 0.35 -1.5 122,909 - IAI47_19470 0.35 -1.2 122,994 + IAI47_19470 0.41 +1.1 122,995 - IAI47_19470 0.41 +0.0 122,995 - IAI47_19470 0.41 -0.9 123,045 + IAI47_19470 0.44 -0.9 123,079 + IAI47_19470 0.47 -0.7 123,079 + IAI47_19470 0.47 +1.9 123,080 - IAI47_19470 0.47 -0.1 123,092 + IAI47_19470 0.48 +2.1 123,101 + IAI47_19470 0.48 +1.8 123,159 + IAI47_19470 0.53 +0.6 123,183 - IAI47_19470 0.54 -0.3 123,183 - IAI47_19470 0.54 +0.7 123,239 + IAI47_19470 0.58 -0.4 123,256 + IAI47_19470 0.59 +0.6 123,256 + IAI47_19470 0.59 +0.6 123,257 - IAI47_19470 0.59 +1.1 123,281 + IAI47_19470 0.61 +0.8 123,282 - IAI47_19470 0.61 -0.3 123,282 - IAI47_19470 0.61 -1.6 123,303 + IAI47_19470 0.63 +1.7
Or see this region's nucleotide sequence