Strain Fitness in Marinobacter adhaerens HP15 around HP15_2761

Experiment: m.b. Cephalothin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2758 and HP15_2759 are separated by 7 nucleotidesHP15_2759 and HP15_2761 are separated by 171 nucleotidesHP15_2761 and HP15_2760 overlap by 4 nucleotidesHP15_2760 and HP15_2762 overlap by 80 nucleotides HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310 _2758 HP15_2759: HP15_2759 - conserved hypothetical protein, at 2,913,318 to 2,913,857 _2759 HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462 _2761 HP15_2760: HP15_2760 - methyltransferase domain family, at 2,915,459 to 2,916,187 _2760 HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010 _2762 Position (kb) 2914 2915 2916Strain fitness (log2 ratio) -1 0 1at 2913.060 kb on + strand, within HP15_2758at 2913.235 kb on + strand, within HP15_2758at 2913.293 kb on + strandat 2913.312 kb on - strandat 2913.312 kb on - strandat 2913.332 kb on + strandat 2913.340 kb on - strandat 2913.398 kb on - strand, within HP15_2759at 2913.432 kb on - strand, within HP15_2759at 2913.540 kb on + strand, within HP15_2759at 2913.589 kb on + strand, within HP15_2759at 2913.747 kb on + strand, within HP15_2759at 2913.869 kb on + strandat 2913.937 kb on + strandat 2914.044 kb on + strandat 2914.130 kb on - strandat 2914.205 kb on + strand, within HP15_2761at 2914.213 kb on - strand, within HP15_2761at 2914.213 kb on - strand, within HP15_2761at 2914.213 kb on - strand, within HP15_2761at 2914.361 kb on + strand, within HP15_2761at 2914.361 kb on + strand, within HP15_2761at 2914.410 kb on + strand, within HP15_2761at 2914.439 kb on + strand, within HP15_2761at 2914.474 kb on + strand, within HP15_2761at 2914.642 kb on + strand, within HP15_2761at 2914.642 kb on + strand, within HP15_2761at 2914.642 kb on + strand, within HP15_2761at 2914.650 kb on - strand, within HP15_2761at 2914.762 kb on + strand, within HP15_2761at 2914.785 kb on + strand, within HP15_2761at 2914.909 kb on - strand, within HP15_2761at 2914.961 kb on + strand, within HP15_2761at 2915.034 kb on - strand, within HP15_2761at 2915.052 kb on - strand, within HP15_2761at 2915.060 kb on + strand, within HP15_2761at 2915.060 kb on + strand, within HP15_2761at 2915.060 kb on + strand, within HP15_2761at 2915.063 kb on - strand, within HP15_2761at 2915.065 kb on + strand, within HP15_2761at 2915.068 kb on - strand, within HP15_2761at 2915.068 kb on - strand, within HP15_2761at 2915.078 kb on - strand, within HP15_2761at 2915.083 kb on - strand, within HP15_2761at 2915.193 kb on - strand, within HP15_2761at 2915.298 kb on - strand, within HP15_2761at 2915.308 kb on - strand, within HP15_2761at 2915.366 kb on + strandat 2915.421 kb on - strandat 2915.513 kb on + strandat 2915.513 kb on + strandat 2915.518 kb on + strandat 2915.518 kb on + strandat 2915.518 kb on + strandat 2915.518 kb on + strandat 2915.719 kb on + strand, within HP15_2760at 2915.848 kb on + strand, within HP15_2760at 2916.027 kb on + strand, within HP15_2760at 2916.178 kb on - strandat 2916.184 kb on - strandat 2916.227 kb on + strand, within HP15_2762at 2916.257 kb on + strand, within HP15_2762at 2916.267 kb on + strand, within HP15_2762at 2916.280 kb on - strand, within HP15_2762at 2916.302 kb on - strand, within HP15_2762at 2916.368 kb on + strand, within HP15_2762at 2916.438 kb on - strand, within HP15_2762

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml
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2,913,060 + HP15_2758 0.46 -0.6
2,913,235 + HP15_2758 0.84 -0.0
2,913,293 + -0.1
2,913,312 - +0.2
2,913,312 - +1.4
2,913,332 + +0.8
2,913,340 - +0.3
2,913,398 - HP15_2759 0.15 +0.3
2,913,432 - HP15_2759 0.21 -0.1
2,913,540 + HP15_2759 0.41 +0.4
2,913,589 + HP15_2759 0.50 -0.3
2,913,747 + HP15_2759 0.79 +0.2
2,913,869 + -0.1
2,913,937 + -1.1
2,914,044 + -0.3
2,914,130 - +0.1
2,914,205 + HP15_2761 0.12 +0.2
2,914,213 - HP15_2761 0.13 -0.5
2,914,213 - HP15_2761 0.13 +0.2
2,914,213 - HP15_2761 0.13 -0.4
2,914,361 + HP15_2761 0.23 +0.3
2,914,361 + HP15_2761 0.23 +0.1
2,914,410 + HP15_2761 0.27 +0.7
2,914,439 + HP15_2761 0.29 +0.3
2,914,474 + HP15_2761 0.31 -0.4
2,914,642 + HP15_2761 0.43 -0.2
2,914,642 + HP15_2761 0.43 -0.3
2,914,642 + HP15_2761 0.43 -0.3
2,914,650 - HP15_2761 0.43 +0.1
2,914,762 + HP15_2761 0.51 +0.3
2,914,785 + HP15_2761 0.53 -0.0
2,914,909 - HP15_2761 0.61 +1.0
2,914,961 + HP15_2761 0.65 +1.0
2,915,034 - HP15_2761 0.70 +0.1
2,915,052 - HP15_2761 0.71 +0.7
2,915,060 + HP15_2761 0.72 -0.2
2,915,060 + HP15_2761 0.72 +1.2
2,915,060 + HP15_2761 0.72 -0.3
2,915,063 - HP15_2761 0.72 +0.3
2,915,065 + HP15_2761 0.72 -0.0
2,915,068 - HP15_2761 0.72 +0.6
2,915,068 - HP15_2761 0.72 -0.1
2,915,078 - HP15_2761 0.73 +0.4
2,915,083 - HP15_2761 0.74 -1.7
2,915,193 - HP15_2761 0.81 +0.4
2,915,298 - HP15_2761 0.88 -0.3
2,915,308 - HP15_2761 0.89 +0.5
2,915,366 + +0.7
2,915,421 - -0.3
2,915,513 + -0.3
2,915,513 + -0.2
2,915,518 + +0.0
2,915,518 + -0.1
2,915,518 + +0.1
2,915,518 + -0.6
2,915,719 + HP15_2760 0.36 -0.6
2,915,848 + HP15_2760 0.53 -0.3
2,916,027 + HP15_2760 0.78 +0.2
2,916,178 - -0.0
2,916,184 - -0.3
2,916,227 + HP15_2762 0.13 +0.9
2,916,257 + HP15_2762 0.17 +0.2
2,916,267 + HP15_2762 0.18 -0.1
2,916,280 - HP15_2762 0.19 -0.1
2,916,302 - HP15_2762 0.21 +0.6
2,916,368 + HP15_2762 0.29 +0.7
2,916,438 - HP15_2762 0.37 +0.3

Or see this region's nucleotide sequence