Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2758 and HP15_2759 are separated by 7 nucleotides HP15_2759 and HP15_2761 are separated by 171 nucleotides HP15_2761 and HP15_2760 overlap by 4 nucleotides HP15_2760 and HP15_2762 overlap by 80 nucleotides
HP15_2758: HP15_2758 - conserved hypothetical protein, membrane, at 2,912,846 to 2,913,310
_2758
HP15_2759: HP15_2759 - conserved hypothetical protein, at 2,913,318 to 2,913,857
_2759
HP15_2761: HP15_2761 - transcriptional regulator, GntR family with aminotransferase domain protein, at 2,914,029 to 2,915,462
_2761
HP15_2760: HP15_2760 - methyltransferase domain family, at 2,915,459 to 2,916,187
_2760
HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010
_2762
Position (kb)
2914
2915
2916 Strain fitness (log2 ratio)
-1
0
1 at 2913.060 kb on + strand, within HP15_2758 at 2913.235 kb on + strand, within HP15_2758 at 2913.293 kb on + strand at 2913.312 kb on - strand at 2913.312 kb on - strand at 2913.332 kb on + strand at 2913.340 kb on - strand at 2913.398 kb on - strand, within HP15_2759 at 2913.432 kb on - strand, within HP15_2759 at 2913.540 kb on + strand, within HP15_2759 at 2913.589 kb on + strand, within HP15_2759 at 2913.747 kb on + strand, within HP15_2759 at 2913.869 kb on + strand at 2913.937 kb on + strand at 2914.044 kb on + strand at 2914.130 kb on - strand at 2914.205 kb on + strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.213 kb on - strand, within HP15_2761 at 2914.361 kb on + strand, within HP15_2761 at 2914.361 kb on + strand, within HP15_2761 at 2914.410 kb on + strand, within HP15_2761 at 2914.439 kb on + strand, within HP15_2761 at 2914.474 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.642 kb on + strand, within HP15_2761 at 2914.650 kb on - strand, within HP15_2761 at 2914.762 kb on + strand, within HP15_2761 at 2914.785 kb on + strand, within HP15_2761 at 2914.909 kb on - strand, within HP15_2761 at 2914.961 kb on + strand, within HP15_2761 at 2915.034 kb on - strand, within HP15_2761 at 2915.052 kb on - strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.060 kb on + strand, within HP15_2761 at 2915.063 kb on - strand, within HP15_2761 at 2915.065 kb on + strand, within HP15_2761 at 2915.068 kb on - strand, within HP15_2761 at 2915.068 kb on - strand, within HP15_2761 at 2915.078 kb on - strand, within HP15_2761 at 2915.083 kb on - strand, within HP15_2761 at 2915.193 kb on - strand, within HP15_2761 at 2915.298 kb on - strand, within HP15_2761 at 2915.308 kb on - strand, within HP15_2761 at 2915.366 kb on + strand at 2915.421 kb on - strand at 2915.513 kb on + strand at 2915.513 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.518 kb on + strand at 2915.719 kb on + strand, within HP15_2760 at 2915.848 kb on + strand, within HP15_2760 at 2916.027 kb on + strand, within HP15_2760 at 2916.178 kb on - strand at 2916.184 kb on - strand at 2916.227 kb on + strand, within HP15_2762 at 2916.257 kb on + strand, within HP15_2762 at 2916.267 kb on + strand, within HP15_2762 at 2916.280 kb on - strand, within HP15_2762 at 2916.302 kb on - strand, within HP15_2762 at 2916.368 kb on + strand, within HP15_2762 at 2916.438 kb on - strand, within HP15_2762
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 2,913,060 + HP15_2758 0.46 -0.6 2,913,235 + HP15_2758 0.84 -0.0 2,913,293 + -0.1 2,913,312 - +0.2 2,913,312 - +1.4 2,913,332 + +0.8 2,913,340 - +0.3 2,913,398 - HP15_2759 0.15 +0.3 2,913,432 - HP15_2759 0.21 -0.1 2,913,540 + HP15_2759 0.41 +0.4 2,913,589 + HP15_2759 0.50 -0.3 2,913,747 + HP15_2759 0.79 +0.2 2,913,869 + -0.1 2,913,937 + -1.1 2,914,044 + -0.3 2,914,130 - +0.1 2,914,205 + HP15_2761 0.12 +0.2 2,914,213 - HP15_2761 0.13 -0.5 2,914,213 - HP15_2761 0.13 +0.2 2,914,213 - HP15_2761 0.13 -0.4 2,914,361 + HP15_2761 0.23 +0.3 2,914,361 + HP15_2761 0.23 +0.1 2,914,410 + HP15_2761 0.27 +0.7 2,914,439 + HP15_2761 0.29 +0.3 2,914,474 + HP15_2761 0.31 -0.4 2,914,642 + HP15_2761 0.43 -0.2 2,914,642 + HP15_2761 0.43 -0.3 2,914,642 + HP15_2761 0.43 -0.3 2,914,650 - HP15_2761 0.43 +0.1 2,914,762 + HP15_2761 0.51 +0.3 2,914,785 + HP15_2761 0.53 -0.0 2,914,909 - HP15_2761 0.61 +1.0 2,914,961 + HP15_2761 0.65 +1.0 2,915,034 - HP15_2761 0.70 +0.1 2,915,052 - HP15_2761 0.71 +0.7 2,915,060 + HP15_2761 0.72 -0.2 2,915,060 + HP15_2761 0.72 +1.2 2,915,060 + HP15_2761 0.72 -0.3 2,915,063 - HP15_2761 0.72 +0.3 2,915,065 + HP15_2761 0.72 -0.0 2,915,068 - HP15_2761 0.72 +0.6 2,915,068 - HP15_2761 0.72 -0.1 2,915,078 - HP15_2761 0.73 +0.4 2,915,083 - HP15_2761 0.74 -1.7 2,915,193 - HP15_2761 0.81 +0.4 2,915,298 - HP15_2761 0.88 -0.3 2,915,308 - HP15_2761 0.89 +0.5 2,915,366 + +0.7 2,915,421 - -0.3 2,915,513 + -0.3 2,915,513 + -0.2 2,915,518 + +0.0 2,915,518 + -0.1 2,915,518 + +0.1 2,915,518 + -0.6 2,915,719 + HP15_2760 0.36 -0.6 2,915,848 + HP15_2760 0.53 -0.3 2,916,027 + HP15_2760 0.78 +0.2 2,916,178 - -0.0 2,916,184 - -0.3 2,916,227 + HP15_2762 0.13 +0.9 2,916,257 + HP15_2762 0.17 +0.2 2,916,267 + HP15_2762 0.18 -0.1 2,916,280 - HP15_2762 0.19 -0.1 2,916,302 - HP15_2762 0.21 +0.6 2,916,368 + HP15_2762 0.29 +0.7 2,916,438 - HP15_2762 0.37 +0.3
Or see this region's nucleotide sequence