Strain Fitness in Marinobacter adhaerens HP15 around HP15_1242

Experiment: m.b. Cephalothin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1240 and HP15_1241 are separated by 9 nucleotidesHP15_1241 and HP15_1242 are separated by 97 nucleotidesHP15_1242 and HP15_1243 are separated by 2 nucleotidesHP15_1243 and HP15_1244 overlap by 4 nucleotidesHP15_1244 and HP15_1245 are separated by 18 nucleotides HP15_1240: HP15_1240 - conserved hypothetical protein, at 1,294,813 to 1,295,124 _1240 HP15_1241: HP15_1241 - ADP-ribose pyrophosphatase, at 1,295,134 to 1,295,685 _1241 HP15_1242: HP15_1242 - MutT/nudix family protein, at 1,295,783 to 1,296,370 _1242 HP15_1243: HP15_1243 - transferase hexapeptide repeat containing protein, at 1,296,373 to 1,296,906 _1243 HP15_1244: HP15_1244 - protein containing DUF1289, at 1,296,903 to 1,297,091 _1244 HP15_1245: HP15_1245 - phosphoribosylglycinamide formyltransferase 2, at 1,297,110 to 1,298,300 _1245 Position (kb) 1295 1296 1297Strain fitness (log2 ratio) -1 0 1at 1294.837 kb on - strandat 1295.078 kb on - strand, within HP15_1240at 1295.090 kb on - strand, within HP15_1240at 1295.197 kb on + strand, within HP15_1241at 1295.323 kb on + strand, within HP15_1241at 1295.323 kb on + strand, within HP15_1241at 1295.363 kb on - strand, within HP15_1241at 1295.409 kb on - strand, within HP15_1241at 1295.498 kb on + strand, within HP15_1241at 1295.626 kb on + strand, within HP15_1241at 1295.677 kb on - strandat 1295.783 kb on - strandat 1295.814 kb on + strandat 1295.847 kb on - strand, within HP15_1242at 1295.855 kb on + strand, within HP15_1242at 1296.070 kb on + strand, within HP15_1242at 1296.078 kb on - strand, within HP15_1242at 1296.137 kb on - strand, within HP15_1242at 1296.355 kb on + strandat 1296.363 kb on - strandat 1296.445 kb on + strand, within HP15_1243at 1296.453 kb on - strand, within HP15_1243at 1296.494 kb on - strand, within HP15_1243at 1296.554 kb on + strand, within HP15_1243at 1296.562 kb on - strand, within HP15_1243at 1296.562 kb on - strand, within HP15_1243at 1296.562 kb on - strand, within HP15_1243at 1296.576 kb on + strand, within HP15_1243at 1296.592 kb on - strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.594 kb on + strand, within HP15_1243at 1296.602 kb on - strand, within HP15_1243at 1296.602 kb on - strand, within HP15_1243at 1296.602 kb on - strand, within HP15_1243at 1296.620 kb on + strand, within HP15_1243at 1296.687 kb on - strand, within HP15_1243at 1296.689 kb on + strand, within HP15_1243at 1296.751 kb on - strand, within HP15_1243at 1296.769 kb on - strand, within HP15_1243at 1296.843 kb on + strand, within HP15_1243at 1296.877 kb on - strandat 1296.897 kb on + strandat 1296.938 kb on + strand, within HP15_1244at 1297.147 kb on - strandat 1297.153 kb on - strandat 1297.317 kb on - strand, within HP15_1245at 1297.332 kb on - strand, within HP15_1245

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml
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1,294,837 - -0.7
1,295,078 - HP15_1240 0.85 +0.0
1,295,090 - HP15_1240 0.89 -0.1
1,295,197 + HP15_1241 0.11 +1.1
1,295,323 + HP15_1241 0.34 -0.9
1,295,323 + HP15_1241 0.34 -0.1
1,295,363 - HP15_1241 0.41 +0.0
1,295,409 - HP15_1241 0.50 -0.3
1,295,498 + HP15_1241 0.66 -0.3
1,295,626 + HP15_1241 0.89 +0.3
1,295,677 - +0.4
1,295,783 - +0.6
1,295,814 + -0.5
1,295,847 - HP15_1242 0.11 -0.5
1,295,855 + HP15_1242 0.12 -1.1
1,296,070 + HP15_1242 0.49 -0.1
1,296,078 - HP15_1242 0.50 -0.2
1,296,137 - HP15_1242 0.60 -1.1
1,296,355 + -0.1
1,296,363 - -0.1
1,296,445 + HP15_1243 0.13 +0.5
1,296,453 - HP15_1243 0.15 -0.8
1,296,494 - HP15_1243 0.23 -0.3
1,296,554 + HP15_1243 0.34 +1.7
1,296,562 - HP15_1243 0.35 -0.2
1,296,562 - HP15_1243 0.35 -0.6
1,296,562 - HP15_1243 0.35 -0.0
1,296,576 + HP15_1243 0.38 +0.1
1,296,592 - HP15_1243 0.41 -0.0
1,296,594 + HP15_1243 0.41 +0.0
1,296,594 + HP15_1243 0.41 -0.6
1,296,594 + HP15_1243 0.41 +0.3
1,296,594 + HP15_1243 0.41 +0.3
1,296,594 + HP15_1243 0.41 -1.3
1,296,594 + HP15_1243 0.41 +1.1
1,296,594 + HP15_1243 0.41 +0.1
1,296,594 + HP15_1243 0.41 -0.1
1,296,602 - HP15_1243 0.43 +0.4
1,296,602 - HP15_1243 0.43 -0.6
1,296,602 - HP15_1243 0.43 +0.4
1,296,620 + HP15_1243 0.46 -0.3
1,296,687 - HP15_1243 0.59 -0.1
1,296,689 + HP15_1243 0.59 +0.6
1,296,751 - HP15_1243 0.71 +0.2
1,296,769 - HP15_1243 0.74 +1.1
1,296,843 + HP15_1243 0.88 +0.1
1,296,877 - +0.5
1,296,897 + -0.7
1,296,938 + HP15_1244 0.19 -0.1
1,297,147 - -0.5
1,297,153 - -0.4
1,297,317 - HP15_1245 0.17 +0.2
1,297,332 - HP15_1245 0.19 +0.2

Or see this region's nucleotide sequence