Experiment: m.b. Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1122 and HP15_1123 are separated by 293 nucleotides HP15_1123 and HP15_1124 are separated by 15 nucleotides HP15_1124 and HP15_1125 are separated by 333 nucleotides
HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562
_1122
HP15_1123: HP15_1123 - transcriptional regulator, TetR family, at 1,150,856 to 1,151,470
_1123
HP15_1124: HP15_1124 - conserved hypothetical protein, at 1,151,486 to 1,152,439
_1124
HP15_1125: HP15_1125 - glutathione S-transferase YghU, at 1,152,773 to 1,153,393
_1125
Position (kb)
1151
1152
1153 Strain fitness (log2 ratio)
-1
0
1 at 1150.522 kb on - strand at 1150.582 kb on + strand at 1150.587 kb on - strand at 1150.878 kb on - strand at 1150.907 kb on + strand at 1150.920 kb on - strand, within HP15_1123 at 1151.073 kb on + strand, within HP15_1123 at 1151.097 kb on - strand, within HP15_1123 at 1151.254 kb on - strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.356 kb on + strand, within HP15_1123 at 1151.409 kb on + strand at 1151.446 kb on + strand at 1151.457 kb on - strand at 1151.618 kb on - strand, within HP15_1124 at 1151.985 kb on + strand, within HP15_1124 at 1151.987 kb on - strand, within HP15_1124 at 1152.181 kb on + strand, within HP15_1124 at 1152.181 kb on + strand at 1152.208 kb on - strand, within HP15_1124 at 1152.236 kb on + strand, within HP15_1124 at 1152.343 kb on - strand, within HP15_1124 at 1152.473 kb on + strand at 1152.481 kb on + strand at 1152.481 kb on - strand at 1152.481 kb on - strand at 1152.481 kb on - strand at 1152.908 kb on + strand, within HP15_1125 at 1152.935 kb on + strand, within HP15_1125 at 1152.937 kb on + strand, within HP15_1125 at 1153.012 kb on + strand, within HP15_1125 at 1153.105 kb on + strand, within HP15_1125 at 1153.238 kb on - strand, within HP15_1125 at 1153.337 kb on + strand at 1153.347 kb on - strand at 1153.355 kb on - strand at 1153.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.01 mg/ml remove 1,150,522 - -0.1 1,150,582 + +0.3 1,150,587 - -0.3 1,150,878 - +0.4 1,150,907 + -0.2 1,150,920 - HP15_1123 0.10 +0.7 1,151,073 + HP15_1123 0.35 +0.1 1,151,097 - HP15_1123 0.39 -0.1 1,151,254 - HP15_1123 0.65 -0.0 1,151,343 + HP15_1123 0.79 -0.6 1,151,343 + HP15_1123 0.79 +0.7 1,151,351 - HP15_1123 0.80 -0.5 1,151,351 - HP15_1123 0.80 +0.5 1,151,351 - HP15_1123 0.80 -0.4 1,151,351 - HP15_1123 0.80 +0.3 1,151,351 - HP15_1123 0.80 +0.8 1,151,356 + HP15_1123 0.81 -0.1 1,151,409 + -0.2 1,151,446 + +0.1 1,151,457 - +0.1 1,151,618 - HP15_1124 0.14 -0.2 1,151,985 + HP15_1124 0.52 +0.2 1,151,987 - HP15_1124 0.53 -0.2 1,152,181 + HP15_1124 0.73 +0.8 1,152,181 + +1.4 1,152,208 - HP15_1124 0.76 +0.0 1,152,236 + HP15_1124 0.79 -0.1 1,152,343 - HP15_1124 0.90 +0.1 1,152,473 + +0.2 1,152,481 + -0.1 1,152,481 - +0.1 1,152,481 - +0.5 1,152,481 - -1.5 1,152,908 + HP15_1125 0.22 -0.1 1,152,935 + HP15_1125 0.26 -0.2 1,152,937 + HP15_1125 0.26 +0.8 1,153,012 + HP15_1125 0.38 +0.2 1,153,105 + HP15_1125 0.53 +0.4 1,153,238 - HP15_1125 0.75 +1.6 1,153,337 + -0.1 1,153,347 - +1.0 1,153,355 - +0.4 1,153,425 + -0.4
Or see this region's nucleotide sequence