Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1899

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1898 and DvMF_1899 are separated by 214 nucleotidesDvMF_1899 and DvMF_1900 are separated by 474 nucleotides DvMF_1898: DvMF_1898 - HpcH/HpaI aldolase (RefSeq), at 2,337,422 to 2,338,201 _1898 DvMF_1899: DvMF_1899 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,338,416 to 2,339,330 _1899 DvMF_1900: DvMF_1900 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,339,805 to 2,340,575 _1900 Position (kb) 2338 2339 2340Strain fitness (log2 ratio) -1 0 1at 2338.658 kb on + strand, within DvMF_1899

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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2,338,658 + DvMF_1899 0.26 +0.7

Or see this region's nucleotide sequence