Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0663

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0662 and DvMF_0663 are separated by 61 nucleotidesDvMF_0663 and DvMF_0664 overlap by 4 nucleotides DvMF_0662: DvMF_0662 - Coenzyme F390 synthetase-like protein (RefSeq), at 799,001 to 800,278 _0662 DvMF_0663: DvMF_0663 - Uncharacterized protein involved in methicillin resistance-like protein (RefSeq), at 800,340 to 801,338 _0663 DvMF_0664: DvMF_0664 - Orn/DAP/Arg decarboxylase 2 (RefSeq), at 801,335 to 802,759 _0664 Position (kb) 800 801 802Strain fitness (log2 ratio) -1 0 1at 799.561 kb on - strand, within DvMF_0662at 799.672 kb on + strand, within DvMF_0662at 799.715 kb on - strand, within DvMF_0662at 799.720 kb on + strand, within DvMF_0662at 799.755 kb on + strand, within DvMF_0662at 800.061 kb on - strand, within DvMF_0662at 800.745 kb on + strand, within DvMF_0663at 800.827 kb on - strand, within DvMF_0663at 800.923 kb on + strand, within DvMF_0663at 801.089 kb on + strand, within DvMF_0663at 801.199 kb on - strand, within DvMF_0663at 801.275 kb on - strandat 801.353 kb on - strandat 801.356 kb on + strandat 801.378 kb on - strandat 801.749 kb on - strand, within DvMF_0664at 801.953 kb on + strand, within DvMF_0664at 802.219 kb on + strand, within DvMF_0664

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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799,561 - DvMF_0662 0.44 -0.5
799,672 + DvMF_0662 0.53 -0.8
799,715 - DvMF_0662 0.56 -0.6
799,720 + DvMF_0662 0.56 -0.6
799,755 + DvMF_0662 0.59 -0.3
800,061 - DvMF_0662 0.83 -0.6
800,745 + DvMF_0663 0.41 -0.5
800,827 - DvMF_0663 0.49 +0.2
800,923 + DvMF_0663 0.58 +0.3
801,089 + DvMF_0663 0.75 -0.4
801,199 - DvMF_0663 0.86 -0.0
801,275 - -0.5
801,353 - -0.2
801,356 + +0.1
801,378 - -0.2
801,749 - DvMF_0664 0.29 -0.6
801,953 + DvMF_0664 0.43 +0.5
802,219 + DvMF_0664 0.62 -0.7

Or see this region's nucleotide sequence