Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.995.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.993.1 and Xcc-8004.994.1 are separated by 62 nucleotidesXcc-8004.994.1 and Xcc-8004.995.1 are separated by 78 nucleotidesXcc-8004.995.1 and Xcc-8004.996.1 are separated by 0 nucleotidesXcc-8004.996.1 and Xcc-8004.997.1 are separated by 185 nucleotides Xcc-8004.993.1: Xcc-8004.993.1 - cellulase S, at 941,628 to 942,416 Xcc-8004.993.1 Xcc-8004.994.1: Xcc-8004.994.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 942,479 to 942,898 Xcc-8004.994.1 Xcc-8004.995.1: Xcc-8004.995.1 - rhamnogalacturonase B, at 942,977 to 943,399 Xcc-8004.995.1 Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101 Xcc-8004.996.1 Xcc-8004.997.1: Xcc-8004.997.1 - Possible GRAM domain, at 944,287 to 944,658 Xcc-8004.997.1 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 942.108 kb on - strand, within Xcc-8004.993.1at 942.108 kb on - strand, within Xcc-8004.993.1at 942.150 kb on + strand, within Xcc-8004.993.1at 942.150 kb on + strand, within Xcc-8004.993.1at 942.189 kb on + strand, within Xcc-8004.993.1at 942.190 kb on - strand, within Xcc-8004.993.1at 942.230 kb on + strand, within Xcc-8004.993.1at 942.333 kb on + strand, within Xcc-8004.993.1at 942.333 kb on + strand, within Xcc-8004.993.1at 942.334 kb on - strand, within Xcc-8004.993.1at 942.334 kb on - strand, within Xcc-8004.993.1at 942.420 kb on + strandat 942.420 kb on + strandat 942.421 kb on - strandat 942.507 kb on + strandat 942.797 kb on - strand, within Xcc-8004.994.1at 942.876 kb on + strandat 942.877 kb on - strandat 942.877 kb on - strandat 942.877 kb on - strandat 942.939 kb on + strandat 943.083 kb on + strand, within Xcc-8004.995.1at 943.083 kb on + strand, within Xcc-8004.995.1at 943.084 kb on - strand, within Xcc-8004.995.1at 943.129 kb on - strand, within Xcc-8004.995.1at 943.158 kb on + strand, within Xcc-8004.995.1at 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.402 kb on - strandat 943.402 kb on - strandat 943.408 kb on - strandat 943.561 kb on - strand, within Xcc-8004.996.1at 943.734 kb on + strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.735 kb on - strand, within Xcc-8004.996.1at 943.764 kb on + strand, within Xcc-8004.996.1at 943.764 kb on + strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.765 kb on - strand, within Xcc-8004.996.1at 943.767 kb on + strand, within Xcc-8004.996.1at 943.768 kb on - strand, within Xcc-8004.996.1at 944.034 kb on + strandat 944.035 kb on - strandat 944.127 kb on + strandat 944.375 kb on - strand, within Xcc-8004.997.1at 944.375 kb on - strand, within Xcc-8004.997.1at 944.375 kb on - strand, within Xcc-8004.997.1at 944.375 kb on - strand, within Xcc-8004.997.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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942,108 - Xcc-8004.993.1 0.61 +0.5
942,108 - Xcc-8004.993.1 0.61 +0.0
942,150 + Xcc-8004.993.1 0.66 +0.4
942,150 + Xcc-8004.993.1 0.66 +0.0
942,189 + Xcc-8004.993.1 0.71 -0.7
942,190 - Xcc-8004.993.1 0.71 -1.3
942,230 + Xcc-8004.993.1 0.76 +0.8
942,333 + Xcc-8004.993.1 0.89 -1.6
942,333 + Xcc-8004.993.1 0.89 -1.6
942,334 - Xcc-8004.993.1 0.89 -0.6
942,334 - Xcc-8004.993.1 0.89 -0.5
942,420 + +0.7
942,420 + -1.4
942,421 - +1.4
942,507 + +1.1
942,797 - Xcc-8004.994.1 0.76 +4.7
942,876 + -1.0
942,877 - +1.5
942,877 - -1.2
942,877 - +0.9
942,939 + -1.1
943,083 + Xcc-8004.995.1 0.25 +0.4
943,083 + Xcc-8004.995.1 0.25 -0.2
943,084 - Xcc-8004.995.1 0.25 -0.7
943,129 - Xcc-8004.995.1 0.36 +2.7
943,158 + Xcc-8004.995.1 0.43 -0.5
943,401 + -0.0
943,401 + -0.9
943,401 + +0.3
943,401 + -3.3
943,401 + +0.2
943,401 + -1.7
943,402 - +0.5
943,402 - -1.2
943,408 - +2.0
943,561 - Xcc-8004.996.1 0.23 +1.5
943,734 + Xcc-8004.996.1 0.48 -2.0
943,735 - Xcc-8004.996.1 0.48 -2.1
943,735 - Xcc-8004.996.1 0.48 -0.6
943,735 - Xcc-8004.996.1 0.48 +0.2
943,735 - Xcc-8004.996.1 0.48 -1.1
943,764 + Xcc-8004.996.1 0.52 -0.7
943,764 + Xcc-8004.996.1 0.52 -0.7
943,765 - Xcc-8004.996.1 0.52 -2.1
943,765 - Xcc-8004.996.1 0.52 +0.3
943,765 - Xcc-8004.996.1 0.52 +0.8
943,765 - Xcc-8004.996.1 0.52 -1.1
943,767 + Xcc-8004.996.1 0.52 +0.1
943,768 - Xcc-8004.996.1 0.52 -0.1
944,034 + +0.3
944,035 - -0.2
944,127 + -0.6
944,375 - Xcc-8004.997.1 0.24 +1.3
944,375 - Xcc-8004.997.1 0.24 -0.1
944,375 - Xcc-8004.997.1 0.24 -0.3
944,375 - Xcc-8004.997.1 0.24 -0.5

Or see this region's nucleotide sequence