Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.6.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4.1 and Xcc-8004.6.1 are separated by 113 nucleotidesXcc-8004.6.1 and Xcc-8004.8.1 are separated by 67 nucleotidesXcc-8004.8.1 and Xcc-8004.9.1 are separated by 62 nucleotides Xcc-8004.4.1: Xcc-8004.4.1 - DNA recombination and repair protein RecF, at 3,633 to 4,739 Xcc-8004.4.1 Xcc-8004.6.1: Xcc-8004.6.1 - DNA gyrase subunit B (EC 5.99.1.3), at 4,853 to 7,297 Xcc-8004.6.1 Xcc-8004.8.1: Xcc-8004.8.1 - FIG01210301: hypothetical protein, at 7,365 to 8,201 Xcc-8004.8.1 Xcc-8004.9.1: Xcc-8004.9.1 - Zn-dependent protease with chaperone function, at 8,264 to 9,070 Xcc-8004.9.1 Position (kb) 4 5 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.949 kb on + strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 3.950 kb on - strand, within Xcc-8004.4.1at 4.105 kb on - strand, within Xcc-8004.4.1at 4.135 kb on + strand, within Xcc-8004.4.1at 4.135 kb on + strand, within Xcc-8004.4.1at 4.135 kb on + strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.136 kb on - strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.227 kb on + strand, within Xcc-8004.4.1at 4.228 kb on - strand, within Xcc-8004.4.1at 4.228 kb on - strand, within Xcc-8004.4.1at 4.228 kb on - strand, within Xcc-8004.4.1at 4.228 kb on - strand, within Xcc-8004.4.1at 4.228 kb on - strand, within Xcc-8004.4.1at 4.386 kb on + strand, within Xcc-8004.4.1at 4.386 kb on + strand, within Xcc-8004.4.1at 4.386 kb on + strand, within Xcc-8004.4.1at 4.386 kb on + strand, within Xcc-8004.4.1at 4.386 kb on + strand, within Xcc-8004.4.1at 4.387 kb on - strand, within Xcc-8004.4.1at 4.387 kb on - strand, within Xcc-8004.4.1at 4.387 kb on - strand, within Xcc-8004.4.1at 4.387 kb on - strand, within Xcc-8004.4.1at 4.387 kb on - strand, within Xcc-8004.4.1at 4.478 kb on + strand, within Xcc-8004.4.1at 4.478 kb on + strand, within Xcc-8004.4.1at 4.478 kb on + strand, within Xcc-8004.4.1at 4.478 kb on + strand, within Xcc-8004.4.1at 4.478 kb on + strand, within Xcc-8004.4.1at 4.479 kb on - strand, within Xcc-8004.4.1at 4.479 kb on - strand, within Xcc-8004.4.1at 4.479 kb on - strand, within Xcc-8004.4.1at 4.479 kb on - strand, within Xcc-8004.4.1at 4.479 kb on - strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.600 kb on + strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.601 kb on - strand, within Xcc-8004.4.1at 4.638 kb on - strandat 4.737 kb on + strandat 4.738 kb on - strandat 4.768 kb on + strandat 4.768 kb on + strandat 4.768 kb on + strandat 4.769 kb on - strandat 4.769 kb on - strandat 4.769 kb on - strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.770 kb on + strandat 4.782 kb on + strandat 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.665 kb on + strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.666 kb on - strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.768 kb on + strand, within Xcc-8004.8.1at 7.769 kb on - strand, within Xcc-8004.8.1at 7.911 kb on + strand, within Xcc-8004.8.1at 7.911 kb on + strand, within Xcc-8004.8.1at 7.912 kb on - strand, within Xcc-8004.8.1at 8.073 kb on + strand, within Xcc-8004.8.1at 8.073 kb on + strand, within Xcc-8004.8.1at 8.073 kb on + strand, within Xcc-8004.8.1at 8.074 kb on - strand, within Xcc-8004.8.1at 8.074 kb on - strand, within Xcc-8004.8.1at 8.074 kb on - strand, within Xcc-8004.8.1at 8.074 kb on - strand, within Xcc-8004.8.1at 8.074 kb on - strand, within Xcc-8004.8.1at 8.106 kb on + strand, within Xcc-8004.8.1at 8.106 kb on + strand, within Xcc-8004.8.1at 8.106 kb on + strand, within Xcc-8004.8.1at 8.106 kb on + strand, within Xcc-8004.8.1at 8.106 kb on + strand, within Xcc-8004.8.1at 8.107 kb on - strand, within Xcc-8004.8.1at 8.107 kb on - strand, within Xcc-8004.8.1at 8.107 kb on - strand, within Xcc-8004.8.1at 8.107 kb on - strand, within Xcc-8004.8.1at 8.182 kb on - strandat 8.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,949 + Xcc-8004.4.1 0.29 +0.0
3,949 + Xcc-8004.4.1 0.29 -0.1
3,949 + Xcc-8004.4.1 0.29 +0.1
3,949 + Xcc-8004.4.1 0.29 +0.9
3,949 + Xcc-8004.4.1 0.29 +0.0
3,949 + Xcc-8004.4.1 0.29 -0.0
3,949 + Xcc-8004.4.1 0.29 -3.0
3,949 + Xcc-8004.4.1 0.29 -0.2
3,949 + Xcc-8004.4.1 0.29 -0.3
3,949 + Xcc-8004.4.1 0.29 +0.5
3,949 + Xcc-8004.4.1 0.29 -0.3
3,949 + Xcc-8004.4.1 0.29 +1.6
3,949 + Xcc-8004.4.1 0.29 +5.0
3,949 + Xcc-8004.4.1 0.29 -1.1
3,949 + Xcc-8004.4.1 0.29 -2.0
3,950 - Xcc-8004.4.1 0.29 +1.0
3,950 - Xcc-8004.4.1 0.29 -1.4
3,950 - Xcc-8004.4.1 0.29 -0.3
3,950 - Xcc-8004.4.1 0.29 +0.3
3,950 - Xcc-8004.4.1 0.29 -0.5
3,950 - Xcc-8004.4.1 0.29 +1.2
3,950 - Xcc-8004.4.1 0.29 +0.9
3,950 - Xcc-8004.4.1 0.29 -0.4
4,105 - Xcc-8004.4.1 0.43 +0.7
4,135 + Xcc-8004.4.1 0.45 +0.3
4,135 + Xcc-8004.4.1 0.45 +1.3
4,135 + Xcc-8004.4.1 0.45 -1.1
4,136 - Xcc-8004.4.1 0.45 +0.8
4,136 - Xcc-8004.4.1 0.45 -1.6
4,136 - Xcc-8004.4.1 0.45 -0.8
4,136 - Xcc-8004.4.1 0.45 +0.3
4,136 - Xcc-8004.4.1 0.45 +1.0
4,136 - Xcc-8004.4.1 0.45 +1.9
4,136 - Xcc-8004.4.1 0.45 +0.4
4,136 - Xcc-8004.4.1 0.45 -0.4
4,227 + Xcc-8004.4.1 0.54 -1.4
4,227 + Xcc-8004.4.1 0.54 -0.6
4,227 + Xcc-8004.4.1 0.54 -0.2
4,227 + Xcc-8004.4.1 0.54 -0.1
4,227 + Xcc-8004.4.1 0.54 +0.4
4,227 + Xcc-8004.4.1 0.54 +0.9
4,227 + Xcc-8004.4.1 0.54 +2.0
4,228 - Xcc-8004.4.1 0.54 -1.4
4,228 - Xcc-8004.4.1 0.54 +0.2
4,228 - Xcc-8004.4.1 0.54 -0.8
4,228 - Xcc-8004.4.1 0.54 -2.1
4,228 - Xcc-8004.4.1 0.54 -1.0
4,386 + Xcc-8004.4.1 0.68 +0.6
4,386 + Xcc-8004.4.1 0.68 +2.6
4,386 + Xcc-8004.4.1 0.68 -0.0
4,386 + Xcc-8004.4.1 0.68 -0.0
4,386 + Xcc-8004.4.1 0.68 -0.5
4,387 - Xcc-8004.4.1 0.68 -1.0
4,387 - Xcc-8004.4.1 0.68 +2.8
4,387 - Xcc-8004.4.1 0.68 -0.7
4,387 - Xcc-8004.4.1 0.68 -0.1
4,387 - Xcc-8004.4.1 0.68 -1.4
4,478 + Xcc-8004.4.1 0.76 -0.6
4,478 + Xcc-8004.4.1 0.76 +0.7
4,478 + Xcc-8004.4.1 0.76 -0.3
4,478 + Xcc-8004.4.1 0.76 -0.0
4,478 + Xcc-8004.4.1 0.76 -0.3
4,479 - Xcc-8004.4.1 0.76 +0.2
4,479 - Xcc-8004.4.1 0.76 -0.7
4,479 - Xcc-8004.4.1 0.76 -2.8
4,479 - Xcc-8004.4.1 0.76 -1.6
4,479 - Xcc-8004.4.1 0.76 -1.2
4,600 + Xcc-8004.4.1 0.87 -1.0
4,600 + Xcc-8004.4.1 0.87 -0.6
4,600 + Xcc-8004.4.1 0.87 -0.5
4,600 + Xcc-8004.4.1 0.87 +0.9
4,600 + Xcc-8004.4.1 0.87 -1.6
4,600 + Xcc-8004.4.1 0.87 +0.7
4,600 + Xcc-8004.4.1 0.87 -1.8
4,600 + Xcc-8004.4.1 0.87 +0.9
4,600 + Xcc-8004.4.1 0.87 -0.5
4,600 + Xcc-8004.4.1 0.87 +0.6
4,600 + Xcc-8004.4.1 0.87 -0.9
4,600 + Xcc-8004.4.1 0.87 +0.8
4,600 + Xcc-8004.4.1 0.87 -1.4
4,600 + Xcc-8004.4.1 0.87 -0.4
4,600 + Xcc-8004.4.1 0.87 +1.3
4,600 + Xcc-8004.4.1 0.87 +0.8
4,600 + Xcc-8004.4.1 0.87 -1.0
4,600 + Xcc-8004.4.1 0.87 +0.7
4,600 + Xcc-8004.4.1 0.87 -0.8
4,600 + Xcc-8004.4.1 0.87 -0.2
4,600 + Xcc-8004.4.1 0.87 +0.5
4,600 + Xcc-8004.4.1 0.87 -0.9
4,600 + Xcc-8004.4.1 0.87 +3.3
4,601 - Xcc-8004.4.1 0.87 -0.2
4,601 - Xcc-8004.4.1 0.87 +0.3
4,601 - Xcc-8004.4.1 0.87 -3.1
4,601 - Xcc-8004.4.1 0.87 -2.2
4,601 - Xcc-8004.4.1 0.87 -0.6
4,601 - Xcc-8004.4.1 0.87 +2.0
4,601 - Xcc-8004.4.1 0.87 -0.3
4,601 - Xcc-8004.4.1 0.87 -1.1
4,601 - Xcc-8004.4.1 0.87 +0.9
4,601 - Xcc-8004.4.1 0.87 -0.4
4,601 - Xcc-8004.4.1 0.87 -1.6
4,601 - Xcc-8004.4.1 0.87 +0.8
4,601 - Xcc-8004.4.1 0.87 +0.2
4,601 - Xcc-8004.4.1 0.87 -0.0
4,601 - Xcc-8004.4.1 0.87 +0.7
4,601 - Xcc-8004.4.1 0.87 +1.8
4,638 - -1.0
4,737 + +0.4
4,738 - +0.3
4,768 + +0.3
4,768 + -1.2
4,768 + +0.2
4,769 - -0.2
4,769 - +1.3
4,769 - -1.3
4,770 + -2.0
4,770 + +0.4
4,770 + +0.3
4,770 + -1.6
4,770 + +1.3
4,770 + +0.8
4,770 + +1.6
4,770 + +1.7
4,770 + -1.6
4,770 + +0.5
4,770 + +0.7
4,770 + +1.7
4,782 + -1.1
7,665 + Xcc-8004.8.1 0.36 +2.3
7,665 + Xcc-8004.8.1 0.36 +0.2
7,665 + Xcc-8004.8.1 0.36 +0.3
7,665 + Xcc-8004.8.1 0.36 -1.3
7,665 + Xcc-8004.8.1 0.36 +0.7
7,665 + Xcc-8004.8.1 0.36 -0.7
7,665 + Xcc-8004.8.1 0.36 +2.1
7,665 + Xcc-8004.8.1 0.36 -0.1
7,665 + Xcc-8004.8.1 0.36 -0.3
7,665 + Xcc-8004.8.1 0.36 +0.5
7,665 + Xcc-8004.8.1 0.36 -2.7
7,665 + Xcc-8004.8.1 0.36 -0.9
7,665 + Xcc-8004.8.1 0.36 -0.3
7,666 - Xcc-8004.8.1 0.36 -0.8
7,666 - Xcc-8004.8.1 0.36 +2.3
7,666 - Xcc-8004.8.1 0.36 -0.4
7,666 - Xcc-8004.8.1 0.36 +1.4
7,666 - Xcc-8004.8.1 0.36 +0.7
7,666 - Xcc-8004.8.1 0.36 -2.3
7,666 - Xcc-8004.8.1 0.36 +0.1
7,666 - Xcc-8004.8.1 0.36 -1.7
7,768 + Xcc-8004.8.1 0.48 +0.1
7,768 + Xcc-8004.8.1 0.48 -0.2
7,768 + Xcc-8004.8.1 0.48 +0.6
7,768 + Xcc-8004.8.1 0.48 +1.0
7,768 + Xcc-8004.8.1 0.48 -2.5
7,768 + Xcc-8004.8.1 0.48 -2.5
7,768 + Xcc-8004.8.1 0.48 -0.4
7,769 - Xcc-8004.8.1 0.48 -1.3
7,911 + Xcc-8004.8.1 0.65 +0.6
7,911 + Xcc-8004.8.1 0.65 -2.3
7,912 - Xcc-8004.8.1 0.65 +0.3
8,073 + Xcc-8004.8.1 0.85 -0.7
8,073 + Xcc-8004.8.1 0.85 -0.6
8,073 + Xcc-8004.8.1 0.85 -0.5
8,074 - Xcc-8004.8.1 0.85 -1.9
8,074 - Xcc-8004.8.1 0.85 -0.0
8,074 - Xcc-8004.8.1 0.85 +0.8
8,074 - Xcc-8004.8.1 0.85 -2.1
8,074 - Xcc-8004.8.1 0.85 +0.3
8,106 + Xcc-8004.8.1 0.89 -0.3
8,106 + Xcc-8004.8.1 0.89 -0.2
8,106 + Xcc-8004.8.1 0.89 -0.4
8,106 + Xcc-8004.8.1 0.89 -0.8
8,106 + Xcc-8004.8.1 0.89 -2.0
8,107 - Xcc-8004.8.1 0.89 -1.1
8,107 - Xcc-8004.8.1 0.89 -0.3
8,107 - Xcc-8004.8.1 0.89 -0.3
8,107 - Xcc-8004.8.1 0.89 +1.4
8,182 - +0.3
8,219 + -0.9

Or see this region's nucleotide sequence