Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.48.1 and Xcc-8004.49.1 are separated by 413 nucleotides Xcc-8004.49.1 and Xcc-8004.50.1 are separated by 234 nucleotides Xcc-8004.50.1 and Xcc-8004.51.1 are separated by 8 nucleotides
Xcc-8004.48.1: Xcc-8004.48.1 - FIG01212903: hypothetical protein, at 47,690 to 48,160
Xcc-8004.48.1
Xcc-8004.49.1: Xcc-8004.49.1 - Pirin-related protein, at 48,574 to 49,464
Xcc-8004.49.1
Xcc-8004.50.1: Xcc-8004.50.1 - FMN-dependent NADH-azoreductase, at 49,699 to 50,013
Xcc-8004.50.1
Xcc-8004.51.1: Xcc-8004.51.1 - FMN-dependent NADH-azoreductase, at 50,022 to 50,402
Xcc-8004.51.1
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.623 kb on + strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.624 kb on - strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.700 kb on + strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.701 kb on - strand at 47.912 kb on + strand, within Xcc-8004.48.1 at 47.912 kb on + strand, within Xcc-8004.48.1 at 47.912 kb on + strand, within Xcc-8004.48.1 at 47.912 kb on + strand, within Xcc-8004.48.1 at 48.121 kb on - strand at 48.121 kb on - strand at 48.121 kb on - strand at 48.214 kb on + strand at 48.214 kb on + strand at 48.215 kb on - strand at 48.215 kb on - strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.264 kb on + strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.265 kb on - strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.266 kb on + strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.267 kb on - strand at 48.311 kb on + strand at 48.311 kb on + strand at 48.311 kb on + strand at 48.339 kb on - strand at 48.343 kb on + strand at 48.343 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.360 kb on - strand at 48.360 kb on - strand at 48.360 kb on - strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.364 kb on + strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.365 kb on - strand at 48.407 kb on + strand at 48.408 kb on - strand at 48.408 kb on - strand at 48.456 kb on + strand at 48.457 kb on - strand at 48.465 kb on + strand at 48.465 kb on + strand at 48.466 kb on - strand at 48.466 kb on - strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.496 kb on + strand at 48.497 kb on - strand at 48.497 kb on - strand at 48.519 kb on + strand at 48.520 kb on - strand at 48.520 kb on - strand at 48.669 kb on + strand, within Xcc-8004.49.1 at 48.832 kb on + strand, within Xcc-8004.49.1 at 48.832 kb on + strand, within Xcc-8004.49.1 at 48.832 kb on + strand, within Xcc-8004.49.1 at 48.833 kb on - strand, within Xcc-8004.49.1 at 48.833 kb on - strand, within Xcc-8004.49.1 at 48.833 kb on - strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.030 kb on + strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.031 kb on - strand, within Xcc-8004.49.1 at 49.087 kb on + strand, within Xcc-8004.49.1 at 49.088 kb on - strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.132 kb on + strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.133 kb on - strand, within Xcc-8004.49.1 at 49.171 kb on + strand, within Xcc-8004.49.1 at 49.171 kb on + strand, within Xcc-8004.49.1 at 49.171 kb on + strand, within Xcc-8004.49.1 at 49.369 kb on + strand, within Xcc-8004.49.1 at 49.370 kb on - strand, within Xcc-8004.49.1 at 49.614 kb on + strand at 49.614 kb on + strand at 49.614 kb on + strand at 49.614 kb on + strand at 49.615 kb on - strand at 49.615 kb on - strand at 49.615 kb on - strand at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.897 kb on + strand, within Xcc-8004.50.1 at 49.898 kb on - strand, within Xcc-8004.50.1 at 49.898 kb on - strand, within Xcc-8004.50.1 at 49.898 kb on - strand, within Xcc-8004.50.1 at 49.898 kb on - strand, within Xcc-8004.50.1 at 49.898 kb on - strand, within Xcc-8004.50.1 at 49.903 kb on + strand, within Xcc-8004.50.1 at 49.904 kb on - strand, within Xcc-8004.50.1 at 49.904 kb on - strand, within Xcc-8004.50.1 at 50.011 kb on + strand at 50.073 kb on + strand, within Xcc-8004.51.1 at 50.073 kb on + strand, within Xcc-8004.51.1 at 50.073 kb on + strand, within Xcc-8004.51.1 at 50.073 kb on + strand, within Xcc-8004.51.1 at 50.074 kb on - strand, within Xcc-8004.51.1 at 50.074 kb on - strand, within Xcc-8004.51.1 at 50.074 kb on - strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.145 kb on + strand, within Xcc-8004.51.1 at 50.146 kb on - strand, within Xcc-8004.51.1 at 50.265 kb on + strand, within Xcc-8004.51.1 at 50.265 kb on + strand, within Xcc-8004.51.1 at 50.265 kb on + strand, within Xcc-8004.51.1 at 50.265 kb on + strand, within Xcc-8004.51.1 at 50.265 kb on + strand, within Xcc-8004.51.1 at 50.265 kb on + strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.266 kb on - strand, within Xcc-8004.51.1 at 50.456 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 47,623 + +1.5 47,623 + +0.1 47,623 + -2.8 47,623 + +0.2 47,623 + -1.1 47,623 + +0.8 47,623 + +1.4 47,623 + -0.4 47,624 - +0.1 47,624 - -1.0 47,624 - +0.6 47,624 - +0.5 47,624 - -2.0 47,624 - -2.1 47,700 + -1.0 47,700 + +0.3 47,700 + +0.2 47,700 + +0.1 47,700 + +0.3 47,700 + -1.2 47,701 - -0.1 47,701 - -0.2 47,701 - -0.4 47,701 - -1.9 47,701 - +0.7 47,701 - +0.6 47,701 - +0.4 47,701 - -0.1 47,912 + Xcc-8004.48.1 0.47 +0.7 47,912 + Xcc-8004.48.1 0.47 -0.2 47,912 + Xcc-8004.48.1 0.47 -0.5 47,912 + Xcc-8004.48.1 0.47 -0.4 48,121 - +0.9 48,121 - -1.1 48,121 - -0.7 48,214 + +0.6 48,214 + -1.0 48,215 - -1.2 48,215 - -0.3 48,264 + -2.1 48,264 + +0.6 48,264 + +1.2 48,264 + -0.7 48,264 + -0.1 48,265 - -2.1 48,265 - +1.0 48,265 - +0.9 48,265 - -0.5 48,265 - -0.1 48,266 + +1.8 48,266 + -1.4 48,266 + +0.6 48,266 + -1.3 48,266 + -1.4 48,266 + -0.1 48,266 + +0.2 48,266 + -1.4 48,266 + -1.1 48,266 + -0.2 48,266 + -0.1 48,266 + +2.0 48,266 + -0.2 48,266 + -2.0 48,266 + +2.3 48,266 + -3.0 48,266 + +0.0 48,266 + -0.8 48,266 + +0.9 48,266 + +1.3 48,266 + -1.6 48,266 + -0.0 48,267 - +0.4 48,267 - +1.8 48,267 - -1.3 48,267 - +0.1 48,267 - +3.3 48,267 - +0.1 48,267 - -0.1 48,267 - +0.6 48,267 - +0.8 48,267 - -0.5 48,267 - -0.7 48,267 - +2.8 48,267 - +0.4 48,267 - -0.9 48,267 - -0.3 48,267 - -0.3 48,267 - +0.1 48,267 - +0.4 48,267 - -0.1 48,267 - +0.1 48,267 - +1.8 48,311 + +0.8 48,311 + -0.7 48,311 + -0.7 48,339 - -1.5 48,343 + +1.1 48,343 + +0.8 48,359 + -0.4 48,359 + -0.2 48,359 + -0.0 48,360 - -0.0 48,360 - +1.8 48,360 - -0.0 48,364 + +0.2 48,364 + +2.3 48,364 + +0.1 48,364 + +0.5 48,364 + +0.6 48,364 + +2.6 48,364 + -0.4 48,364 + +0.4 48,364 + +0.3 48,365 - -0.5 48,365 - -1.4 48,365 - -0.2 48,365 - -2.3 48,365 - -0.5 48,365 - -0.5 48,365 - -0.5 48,365 - +1.2 48,365 - +1.7 48,365 - -0.6 48,365 - +1.0 48,365 - -0.8 48,365 - +1.0 48,365 - -0.3 48,365 - -0.2 48,365 - +0.6 48,407 + -1.0 48,408 - +0.9 48,408 - +0.3 48,456 + +0.4 48,457 - +0.2 48,465 + -1.2 48,465 + -1.3 48,466 - -1.1 48,466 - -2.0 48,496 + -0.9 48,496 + -1.4 48,496 + +0.7 48,496 + -2.4 48,496 + +0.5 48,496 + -2.1 48,497 - -0.4 48,497 - -0.1 48,519 + -0.9 48,520 - -0.7 48,520 - +3.4 48,669 + Xcc-8004.49.1 0.11 -0.6 48,832 + Xcc-8004.49.1 0.29 +0.0 48,832 + Xcc-8004.49.1 0.29 +0.4 48,832 + Xcc-8004.49.1 0.29 +2.6 48,833 - Xcc-8004.49.1 0.29 +1.0 48,833 - Xcc-8004.49.1 0.29 -0.0 48,833 - Xcc-8004.49.1 0.29 +0.3 49,030 + Xcc-8004.49.1 0.51 -0.4 49,030 + Xcc-8004.49.1 0.51 -0.2 49,030 + Xcc-8004.49.1 0.51 -0.3 49,030 + Xcc-8004.49.1 0.51 +0.6 49,030 + Xcc-8004.49.1 0.51 +0.9 49,031 - Xcc-8004.49.1 0.51 -0.4 49,031 - Xcc-8004.49.1 0.51 -0.2 49,031 - Xcc-8004.49.1 0.51 -2.6 49,031 - Xcc-8004.49.1 0.51 +0.4 49,031 - Xcc-8004.49.1 0.51 -0.8 49,031 - Xcc-8004.49.1 0.51 +0.1 49,031 - Xcc-8004.49.1 0.51 +0.1 49,031 - Xcc-8004.49.1 0.51 +1.3 49,031 - Xcc-8004.49.1 0.51 +1.6 49,031 - Xcc-8004.49.1 0.51 -0.4 49,031 - Xcc-8004.49.1 0.51 -0.3 49,087 + Xcc-8004.49.1 0.58 -1.1 49,088 - Xcc-8004.49.1 0.58 +0.3 49,132 + Xcc-8004.49.1 0.63 -3.3 49,132 + Xcc-8004.49.1 0.63 -0.4 49,132 + Xcc-8004.49.1 0.63 -0.6 49,132 + Xcc-8004.49.1 0.63 +1.3 49,133 - Xcc-8004.49.1 0.63 +1.4 49,133 - Xcc-8004.49.1 0.63 +1.4 49,133 - Xcc-8004.49.1 0.63 +0.4 49,133 - Xcc-8004.49.1 0.63 +1.6 49,133 - Xcc-8004.49.1 0.63 -0.6 49,133 - Xcc-8004.49.1 0.63 -0.7 49,133 - Xcc-8004.49.1 0.63 +1.4 49,171 + Xcc-8004.49.1 0.67 +0.2 49,171 + Xcc-8004.49.1 0.67 +0.3 49,171 + Xcc-8004.49.1 0.67 -0.8 49,369 + Xcc-8004.49.1 0.89 -0.2 49,370 - Xcc-8004.49.1 0.89 +1.3 49,614 + -2.0 49,614 + +0.1 49,614 + -1.2 49,614 + -1.5 49,615 - -1.0 49,615 - +1.0 49,615 - +0.3 49,897 + Xcc-8004.50.1 0.63 -1.1 49,897 + Xcc-8004.50.1 0.63 -1.7 49,897 + Xcc-8004.50.1 0.63 -1.9 49,897 + Xcc-8004.50.1 0.63 -0.4 49,897 + Xcc-8004.50.1 0.63 -0.7 49,897 + Xcc-8004.50.1 0.63 +0.2 49,897 + Xcc-8004.50.1 0.63 +1.3 49,897 + Xcc-8004.50.1 0.63 +0.9 49,897 + Xcc-8004.50.1 0.63 +0.3 49,898 - Xcc-8004.50.1 0.63 +0.3 49,898 - Xcc-8004.50.1 0.63 +0.5 49,898 - Xcc-8004.50.1 0.63 +0.5 49,898 - Xcc-8004.50.1 0.63 -0.7 49,898 - Xcc-8004.50.1 0.63 +1.1 49,903 + Xcc-8004.50.1 0.65 +0.8 49,904 - Xcc-8004.50.1 0.65 +0.3 49,904 - Xcc-8004.50.1 0.65 +0.5 50,011 + +0.2 50,073 + Xcc-8004.51.1 0.13 -0.3 50,073 + Xcc-8004.51.1 0.13 -0.4 50,073 + Xcc-8004.51.1 0.13 -0.0 50,073 + Xcc-8004.51.1 0.13 -0.3 50,074 - Xcc-8004.51.1 0.14 -2.4 50,074 - Xcc-8004.51.1 0.14 +0.6 50,074 - Xcc-8004.51.1 0.14 -0.7 50,145 + Xcc-8004.51.1 0.32 +0.2 50,145 + Xcc-8004.51.1 0.32 +0.9 50,145 + Xcc-8004.51.1 0.32 -0.3 50,145 + Xcc-8004.51.1 0.32 -0.1 50,145 + Xcc-8004.51.1 0.32 -1.2 50,145 + Xcc-8004.51.1 0.32 +0.3 50,145 + Xcc-8004.51.1 0.32 -0.3 50,146 - Xcc-8004.51.1 0.33 -0.2 50,265 + Xcc-8004.51.1 0.64 -0.0 50,265 + Xcc-8004.51.1 0.64 -0.5 50,265 + Xcc-8004.51.1 0.64 -0.8 50,265 + Xcc-8004.51.1 0.64 -0.1 50,265 + Xcc-8004.51.1 0.64 -1.8 50,265 + Xcc-8004.51.1 0.64 -1.8 50,266 - Xcc-8004.51.1 0.64 -0.9 50,266 - Xcc-8004.51.1 0.64 -1.1 50,266 - Xcc-8004.51.1 0.64 -1.0 50,266 - Xcc-8004.51.1 0.64 +1.7 50,266 - Xcc-8004.51.1 0.64 -0.4 50,266 - Xcc-8004.51.1 0.64 +0.5 50,266 - Xcc-8004.51.1 0.64 -0.2 50,456 - -0.8
Or see this region's nucleotide sequence