Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4868.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4866.1 and Xcc-8004.4867.1 are separated by 4 nucleotidesXcc-8004.4867.1 and Xcc-8004.4868.1 are separated by 17 nucleotidesXcc-8004.4868.1 and Xcc-8004.4869.1 are separated by 333 nucleotides Xcc-8004.4866.1: Xcc-8004.4866.1 - Mobile element protein, at 4,625,654 to 4,625,779 Xcc-8004.4866.1 Xcc-8004.4867.1: Xcc-8004.4867.1 - Mobile element protein, at 4,625,784 to 4,626,638 Xcc-8004.4867.1 Xcc-8004.4868.1: Xcc-8004.4868.1 - Mobile element protein, at 4,626,656 to 4,626,928 Xcc-8004.4868.1 Xcc-8004.4869.1: Xcc-8004.4869.1 - hypothetical protein, at 4,627,262 to 4,628,275 Xcc-8004.4869.1 Position (kb) 4626 4627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4626.971 kb on + strandat 4626.971 kb on + strandat 4626.987 kb on + strandat 4627.015 kb on - strandat 4627.028 kb on + strandat 4627.028 kb on + strandat 4627.029 kb on - strandat 4627.041 kb on - strandat 4627.073 kb on - strandat 4627.086 kb on + strandat 4627.086 kb on + strandat 4627.086 kb on + strandat 4627.086 kb on + strandat 4627.086 kb on + strandat 4627.087 kb on - strandat 4627.087 kb on - strandat 4627.087 kb on - strandat 4627.091 kb on - strandat 4627.103 kb on + strandat 4627.103 kb on + strandat 4627.103 kb on + strandat 4627.103 kb on + strandat 4627.104 kb on - strandat 4627.104 kb on - strandat 4627.110 kb on + strandat 4627.111 kb on - strandat 4627.172 kb on + strandat 4627.172 kb on + strandat 4627.172 kb on + strandat 4627.173 kb on - strandat 4627.173 kb on - strandat 4627.173 kb on - strandat 4627.173 kb on - strandat 4627.175 kb on + strandat 4627.175 kb on + strandat 4627.175 kb on + strandat 4627.179 kb on - strandat 4627.192 kb on + strandat 4627.193 kb on - strandat 4627.223 kb on - strandat 4627.229 kb on + strandat 4627.231 kb on + strandat 4627.232 kb on - strandat 4627.244 kb on + strandat 4627.259 kb on + strandat 4627.259 kb on + strandat 4627.260 kb on - strandat 4627.262 kb on - strandat 4627.357 kb on + strandat 4627.357 kb on + strandat 4627.384 kb on + strand, within Xcc-8004.4869.1at 4627.409 kb on + strand, within Xcc-8004.4869.1at 4627.409 kb on + strand, within Xcc-8004.4869.1at 4627.410 kb on - strand, within Xcc-8004.4869.1at 4627.410 kb on - strand, within Xcc-8004.4869.1at 4627.410 kb on - strand, within Xcc-8004.4869.1at 4627.410 kb on - strand, within Xcc-8004.4869.1at 4627.410 kb on - strand, within Xcc-8004.4869.1at 4627.416 kb on + strand, within Xcc-8004.4869.1at 4627.417 kb on - strand, within Xcc-8004.4869.1at 4627.474 kb on + strand, within Xcc-8004.4869.1at 4627.474 kb on + strand, within Xcc-8004.4869.1at 4627.475 kb on - strand, within Xcc-8004.4869.1at 4627.475 kb on - strand, within Xcc-8004.4869.1at 4627.475 kb on - strand, within Xcc-8004.4869.1at 4627.475 kb on - strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.515 kb on + strand, within Xcc-8004.4869.1at 4627.516 kb on - strand, within Xcc-8004.4869.1at 4627.516 kb on - strand, within Xcc-8004.4869.1at 4627.534 kb on + strand, within Xcc-8004.4869.1at 4627.534 kb on + strand, within Xcc-8004.4869.1at 4627.534 kb on + strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.535 kb on - strand, within Xcc-8004.4869.1at 4627.570 kb on + strand, within Xcc-8004.4869.1at 4627.570 kb on + strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.571 kb on - strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.673 kb on + strand, within Xcc-8004.4869.1at 4627.674 kb on - strand, within Xcc-8004.4869.1at 4627.674 kb on - strand, within Xcc-8004.4869.1at 4627.677 kb on + strand, within Xcc-8004.4869.1at 4627.691 kb on + strand, within Xcc-8004.4869.1at 4627.691 kb on + strand, within Xcc-8004.4869.1at 4627.691 kb on + strand, within Xcc-8004.4869.1at 4627.693 kb on + strand, within Xcc-8004.4869.1at 4627.693 kb on + strand, within Xcc-8004.4869.1at 4627.694 kb on - strand, within Xcc-8004.4869.1at 4627.727 kb on - strand, within Xcc-8004.4869.1at 4627.802 kb on - strand, within Xcc-8004.4869.1at 4627.802 kb on - strand, within Xcc-8004.4869.1at 4627.810 kb on - strand, within Xcc-8004.4869.1at 4627.810 kb on - strand, within Xcc-8004.4869.1at 4627.818 kb on + strand, within Xcc-8004.4869.1at 4627.819 kb on - strand, within Xcc-8004.4869.1at 4627.819 kb on - strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.843 kb on + strand, within Xcc-8004.4869.1at 4627.844 kb on - strand, within Xcc-8004.4869.1at 4627.858 kb on + strand, within Xcc-8004.4869.1at 4627.858 kb on + strand, within Xcc-8004.4869.1at 4627.894 kb on + strand, within Xcc-8004.4869.1at 4627.901 kb on + strand, within Xcc-8004.4869.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,626,971 + -0.1
4,626,971 + -0.5
4,626,987 + -0.8
4,627,015 - +0.7
4,627,028 + +0.9
4,627,028 + -0.4
4,627,029 - -0.5
4,627,041 - +0.3
4,627,073 - -1.7
4,627,086 + -0.7
4,627,086 + -0.5
4,627,086 + +1.7
4,627,086 + +0.5
4,627,086 + -0.7
4,627,087 - +0.7
4,627,087 - -0.3
4,627,087 - +0.7
4,627,091 - -2.8
4,627,103 + +0.4
4,627,103 + -0.8
4,627,103 + -1.1
4,627,103 + +0.3
4,627,104 - -0.2
4,627,104 - +0.0
4,627,110 + +0.1
4,627,111 - +0.3
4,627,172 + -1.1
4,627,172 + +0.3
4,627,172 + -0.9
4,627,173 - -0.7
4,627,173 - +0.0
4,627,173 - -0.1
4,627,173 - +0.4
4,627,175 + -1.1
4,627,175 + -0.0
4,627,175 + +1.0
4,627,179 - -0.1
4,627,192 + -0.7
4,627,193 - +0.5
4,627,223 - +0.9
4,627,229 + -1.1
4,627,231 + +0.8
4,627,232 - -1.7
4,627,244 + -0.4
4,627,259 + +0.5
4,627,259 + -0.5
4,627,260 - -1.2
4,627,262 - +0.7
4,627,357 + -0.8
4,627,357 + -2.5
4,627,384 + Xcc-8004.4869.1 0.12 -0.2
4,627,409 + Xcc-8004.4869.1 0.14 -1.1
4,627,409 + Xcc-8004.4869.1 0.14 -0.7
4,627,410 - Xcc-8004.4869.1 0.15 -0.9
4,627,410 - Xcc-8004.4869.1 0.15 +0.8
4,627,410 - Xcc-8004.4869.1 0.15 -1.4
4,627,410 - Xcc-8004.4869.1 0.15 -0.6
4,627,410 - Xcc-8004.4869.1 0.15 +1.4
4,627,416 + Xcc-8004.4869.1 0.15 -0.3
4,627,417 - Xcc-8004.4869.1 0.15 -0.3
4,627,474 + Xcc-8004.4869.1 0.21 -1.7
4,627,474 + Xcc-8004.4869.1 0.21 -1.3
4,627,475 - Xcc-8004.4869.1 0.21 -1.2
4,627,475 - Xcc-8004.4869.1 0.21 +0.6
4,627,475 - Xcc-8004.4869.1 0.21 +0.5
4,627,475 - Xcc-8004.4869.1 0.21 -1.0
4,627,515 + Xcc-8004.4869.1 0.25 -0.4
4,627,515 + Xcc-8004.4869.1 0.25 -1.4
4,627,515 + Xcc-8004.4869.1 0.25 +1.0
4,627,515 + Xcc-8004.4869.1 0.25 -1.7
4,627,516 - Xcc-8004.4869.1 0.25 -0.4
4,627,516 - Xcc-8004.4869.1 0.25 -0.4
4,627,534 + Xcc-8004.4869.1 0.27 -0.2
4,627,534 + Xcc-8004.4869.1 0.27 -0.4
4,627,534 + Xcc-8004.4869.1 0.27 +0.2
4,627,535 - Xcc-8004.4869.1 0.27 +1.2
4,627,535 - Xcc-8004.4869.1 0.27 -0.2
4,627,535 - Xcc-8004.4869.1 0.27 +0.1
4,627,535 - Xcc-8004.4869.1 0.27 -1.0
4,627,570 + Xcc-8004.4869.1 0.30 +1.0
4,627,570 + Xcc-8004.4869.1 0.30 +1.4
4,627,571 - Xcc-8004.4869.1 0.30 -0.0
4,627,571 - Xcc-8004.4869.1 0.30 +0.4
4,627,571 - Xcc-8004.4869.1 0.30 +0.1
4,627,571 - Xcc-8004.4869.1 0.30 +0.4
4,627,673 + Xcc-8004.4869.1 0.41 -0.7
4,627,673 + Xcc-8004.4869.1 0.41 -0.4
4,627,673 + Xcc-8004.4869.1 0.41 -1.9
4,627,673 + Xcc-8004.4869.1 0.41 -0.3
4,627,673 + Xcc-8004.4869.1 0.41 -0.9
4,627,673 + Xcc-8004.4869.1 0.41 -0.9
4,627,674 - Xcc-8004.4869.1 0.41 +0.3
4,627,674 - Xcc-8004.4869.1 0.41 +0.4
4,627,677 + Xcc-8004.4869.1 0.41 -0.9
4,627,691 + Xcc-8004.4869.1 0.42 -0.7
4,627,691 + Xcc-8004.4869.1 0.42 +0.7
4,627,691 + Xcc-8004.4869.1 0.42 +0.0
4,627,693 + Xcc-8004.4869.1 0.43 +0.9
4,627,693 + Xcc-8004.4869.1 0.43 +0.4
4,627,694 - Xcc-8004.4869.1 0.43 +1.1
4,627,727 - Xcc-8004.4869.1 0.46 +0.2
4,627,802 - Xcc-8004.4869.1 0.53 +1.0
4,627,802 - Xcc-8004.4869.1 0.53 +1.3
4,627,810 - Xcc-8004.4869.1 0.54 -0.9
4,627,810 - Xcc-8004.4869.1 0.54 +0.8
4,627,818 + Xcc-8004.4869.1 0.55 -0.2
4,627,819 - Xcc-8004.4869.1 0.55 -1.1
4,627,819 - Xcc-8004.4869.1 0.55 -1.5
4,627,843 + Xcc-8004.4869.1 0.57 +0.0
4,627,843 + Xcc-8004.4869.1 0.57 +0.2
4,627,843 + Xcc-8004.4869.1 0.57 +0.0
4,627,843 + Xcc-8004.4869.1 0.57 +1.8
4,627,844 - Xcc-8004.4869.1 0.57 -1.6
4,627,858 + Xcc-8004.4869.1 0.59 -0.4
4,627,858 + Xcc-8004.4869.1 0.59 +0.7
4,627,894 + Xcc-8004.4869.1 0.62 -1.8
4,627,901 + Xcc-8004.4869.1 0.63 -1.3

Or see this region's nucleotide sequence