Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4796.1 and Xcc-8004.4797.1 are separated by 24 nucleotides Xcc-8004.4797.1 and Xcc-8004.4798.1 are separated by 34 nucleotides Xcc-8004.4798.1 and Xcc-8004.4799.1 are separated by 63 nucleotides Xcc-8004.4799.1 and Xcc-8004.4800.1 are separated by 112 nucleotides
Xcc-8004.4796.1: Xcc-8004.4796.1 - PhnB protein, at 4,567,921 to 4,568,388
Xcc-8004.4796.1
Xcc-8004.4797.1: Xcc-8004.4797.1 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 4,568,413 to 4,568,847
Xcc-8004.4797.1
Xcc-8004.4798.1: Xcc-8004.4798.1 - FIG01210480: hypothetical protein, at 4,568,882 to 4,569,238
Xcc-8004.4798.1
Xcc-8004.4799.1: Xcc-8004.4799.1 - RNA polymerase sigma-70 factor, ECF subfamily, at 4,569,302 to 4,570,573
Xcc-8004.4799.1
Xcc-8004.4800.1: Xcc-8004.4800.1 - FIG074102: hypothetical protein, at 4,570,686 to 4,572,245
Xcc-8004.4800.1
Position (kb) 4569
4570
4571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4568.334 kb on + strand, within Xcc-8004.4796.1 at 4568.335 kb on - strand, within Xcc-8004.4796.1 at 4568.335 kb on - strand, within Xcc-8004.4796.1 at 4568.335 kb on - strand, within Xcc-8004.4796.1 at 4568.429 kb on - strand at 4568.429 kb on - strand at 4568.470 kb on + strand, within Xcc-8004.4797.1 at 4568.470 kb on + strand, within Xcc-8004.4797.1 at 4568.509 kb on + strand, within Xcc-8004.4797.1 at 4568.509 kb on + strand, within Xcc-8004.4797.1 at 4568.509 kb on + strand, within Xcc-8004.4797.1 at 4568.510 kb on - strand, within Xcc-8004.4797.1 at 4568.911 kb on + strand at 4568.911 kb on + strand at 4568.911 kb on + strand at 4568.911 kb on + strand at 4568.911 kb on + strand at 4568.912 kb on - strand at 4568.912 kb on - strand at 4569.533 kb on + strand, within Xcc-8004.4799.1 at 4569.534 kb on - strand, within Xcc-8004.4799.1 at 4569.534 kb on - strand, within Xcc-8004.4799.1 at 4569.534 kb on - strand, within Xcc-8004.4799.1 at 4569.890 kb on + strand, within Xcc-8004.4799.1 at 4569.890 kb on + strand, within Xcc-8004.4799.1 at 4569.890 kb on + strand, within Xcc-8004.4799.1 at 4569.895 kb on - strand, within Xcc-8004.4799.1 at 4570.024 kb on - strand, within Xcc-8004.4799.1 at 4570.193 kb on + strand, within Xcc-8004.4799.1 at 4570.193 kb on + strand, within Xcc-8004.4799.1 at 4570.193 kb on + strand, within Xcc-8004.4799.1 at 4570.277 kb on + strand, within Xcc-8004.4799.1 at 4570.277 kb on + strand, within Xcc-8004.4799.1 at 4570.377 kb on + strand, within Xcc-8004.4799.1 at 4570.378 kb on - strand, within Xcc-8004.4799.1 at 4570.412 kb on + strand, within Xcc-8004.4799.1 at 4570.413 kb on - strand, within Xcc-8004.4799.1 at 4570.455 kb on + strand at 4570.456 kb on - strand at 4570.564 kb on - strand at 4570.618 kb on - strand at 4570.687 kb on + strand at 4570.687 kb on + strand at 4570.687 kb on + strand at 4570.729 kb on + strand at 4570.730 kb on - strand at 4570.802 kb on - strand at 4570.874 kb on - strand, within Xcc-8004.4800.1 at 4570.874 kb on - strand, within Xcc-8004.4800.1 at 4570.985 kb on - strand, within Xcc-8004.4800.1 at 4571.059 kb on + strand, within Xcc-8004.4800.1 at 4571.120 kb on - strand, within Xcc-8004.4800.1 at 4571.384 kb on + strand, within Xcc-8004.4800.1 at 4571.385 kb on - strand, within Xcc-8004.4800.1 at 4571.446 kb on + strand, within Xcc-8004.4800.1 at 4571.446 kb on + strand, within Xcc-8004.4800.1 at 4571.568 kb on + strand, within Xcc-8004.4800.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,568,334 + Xcc-8004.4796.1 0.88 -0.3 4,568,335 - Xcc-8004.4796.1 0.88 -0.4 4,568,335 - Xcc-8004.4796.1 0.88 -2.6 4,568,335 - Xcc-8004.4796.1 0.88 +2.9 4,568,429 - -1.1 4,568,429 - +0.8 4,568,470 + Xcc-8004.4797.1 0.13 -0.7 4,568,470 + Xcc-8004.4797.1 0.13 -0.9 4,568,509 + Xcc-8004.4797.1 0.22 -0.5 4,568,509 + Xcc-8004.4797.1 0.22 -0.6 4,568,509 + Xcc-8004.4797.1 0.22 +0.4 4,568,510 - Xcc-8004.4797.1 0.22 +0.4 4,568,911 + +0.5 4,568,911 + -0.5 4,568,911 + +0.4 4,568,911 + -1.5 4,568,911 + -0.3 4,568,912 - -1.2 4,568,912 - -0.8 4,569,533 + Xcc-8004.4799.1 0.18 -0.6 4,569,534 - Xcc-8004.4799.1 0.18 -2.4 4,569,534 - Xcc-8004.4799.1 0.18 +0.2 4,569,534 - Xcc-8004.4799.1 0.18 -0.3 4,569,890 + Xcc-8004.4799.1 0.46 +0.1 4,569,890 + Xcc-8004.4799.1 0.46 -1.7 4,569,890 + Xcc-8004.4799.1 0.46 +0.6 4,569,895 - Xcc-8004.4799.1 0.47 -3.3 4,570,024 - Xcc-8004.4799.1 0.57 -1.1 4,570,193 + Xcc-8004.4799.1 0.70 +0.2 4,570,193 + Xcc-8004.4799.1 0.70 -0.6 4,570,193 + Xcc-8004.4799.1 0.70 -1.2 4,570,277 + Xcc-8004.4799.1 0.77 +0.6 4,570,277 + Xcc-8004.4799.1 0.77 +0.2 4,570,377 + Xcc-8004.4799.1 0.85 -0.3 4,570,378 - Xcc-8004.4799.1 0.85 +0.1 4,570,412 + Xcc-8004.4799.1 0.87 -1.0 4,570,413 - Xcc-8004.4799.1 0.87 -0.6 4,570,455 + +0.2 4,570,456 - +0.8 4,570,564 - -2.4 4,570,618 - +1.3 4,570,687 + +0.2 4,570,687 + -1.2 4,570,687 + +2.7 4,570,729 + -1.0 4,570,730 - -2.4 4,570,802 - -0.3 4,570,874 - Xcc-8004.4800.1 0.12 -0.6 4,570,874 - Xcc-8004.4800.1 0.12 -0.2 4,570,985 - Xcc-8004.4800.1 0.19 -0.0 4,571,059 + Xcc-8004.4800.1 0.24 -1.4 4,571,120 - Xcc-8004.4800.1 0.28 +1.5 4,571,384 + Xcc-8004.4800.1 0.45 +0.3 4,571,385 - Xcc-8004.4800.1 0.45 +0.4 4,571,446 + Xcc-8004.4800.1 0.49 -0.2 4,571,446 + Xcc-8004.4800.1 0.49 -1.4 4,571,568 + Xcc-8004.4800.1 0.57 +1.3
Or see this region's nucleotide sequence