Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4619.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4616.1 and Xcc-8004.4617.1 are separated by 29 nucleotidesXcc-8004.4617.1 and Xcc-8004.4618.1 overlap by 14 nucleotidesXcc-8004.4618.1 and Xcc-8004.4619.1 are separated by 98 nucleotidesXcc-8004.4619.1 and Xcc-8004.4620.1 are separated by 152 nucleotides Xcc-8004.4616.1: Xcc-8004.4616.1 - Sensor histidine kinase, at 4,401,143 to 4,403,251 Xcc-8004.4616.1 Xcc-8004.4617.1: Xcc-8004.4617.1 - FIG01209884: hypothetical protein, at 4,403,281 to 4,403,571 Xcc-8004.4617.1 Xcc-8004.4618.1: Xcc-8004.4618.1 - FIG01209774: hypothetical protein, at 4,403,558 to 4,404,052 Xcc-8004.4618.1 Xcc-8004.4619.1: Xcc-8004.4619.1 - FIG01212331: hypothetical protein, at 4,404,151 to 4,404,831 Xcc-8004.4619.1 Xcc-8004.4620.1: Xcc-8004.4620.1 - Alanine racemase (EC 5.1.1.1), at 4,404,984 to 4,406,066 Xcc-8004.4620.1 Position (kb) 4404 4405Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4403.282 kb on + strandat 4403.283 kb on - strandat 4403.283 kb on - strandat 4403.283 kb on - strandat 4403.429 kb on + strand, within Xcc-8004.4617.1at 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.674 kb on - strand, within Xcc-8004.4618.1at 4403.674 kb on - strand, within Xcc-8004.4618.1at 4403.674 kb on - strand, within Xcc-8004.4618.1at 4403.742 kb on + strand, within Xcc-8004.4618.1at 4403.748 kb on + strand, within Xcc-8004.4618.1at 4403.748 kb on + strand, within Xcc-8004.4618.1at 4403.749 kb on - strand, within Xcc-8004.4618.1at 4403.749 kb on - strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.043 kb on - strandat 4404.043 kb on - strandat 4404.043 kb on - strandat 4404.133 kb on + strandat 4404.424 kb on + strand, within Xcc-8004.4619.1at 4404.424 kb on + strand, within Xcc-8004.4619.1at 4404.425 kb on - strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.566 kb on - strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.816 kb on + strandat 4404.817 kb on - strandat 4404.940 kb on + strandat 4404.940 kb on + strandat 4404.969 kb on + strandat 4404.970 kb on - strandat 4405.006 kb on + strandat 4405.007 kb on - strandat 4405.007 kb on - strandat 4405.007 kb on - strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.241 kb on - strand, within Xcc-8004.4620.1at 4405.252 kb on + strand, within Xcc-8004.4620.1at 4405.252 kb on + strand, within Xcc-8004.4620.1at 4405.253 kb on - strand, within Xcc-8004.4620.1at 4405.309 kb on + strand, within Xcc-8004.4620.1at 4405.309 kb on + strand, within Xcc-8004.4620.1at 4405.426 kb on + strand, within Xcc-8004.4620.1at 4405.426 kb on + strand, within Xcc-8004.4620.1at 4405.427 kb on - strand, within Xcc-8004.4620.1at 4405.427 kb on - strand, within Xcc-8004.4620.1at 4405.427 kb on - strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.782 kb on + strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1at 4405.783 kb on - strand, within Xcc-8004.4620.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,403,282 + -1.2
4,403,283 - +0.7
4,403,283 - -2.0
4,403,283 - +0.9
4,403,429 + Xcc-8004.4617.1 0.51 -0.3
4,403,571 + +0.6
4,403,571 + +0.3
4,403,571 + -3.2
4,403,571 + -0.9
4,403,571 + -0.4
4,403,571 + -2.4
4,403,571 + +0.5
4,403,571 + +0.6
4,403,572 - +0.7
4,403,572 - +0.3
4,403,572 - -0.2
4,403,572 - -0.7
4,403,572 - +1.9
4,403,628 + Xcc-8004.4618.1 0.14 +0.9
4,403,628 + Xcc-8004.4618.1 0.14 +0.7
4,403,628 + Xcc-8004.4618.1 0.14 +1.1
4,403,628 + Xcc-8004.4618.1 0.14 +0.5
4,403,628 + Xcc-8004.4618.1 0.14 +1.1
4,403,628 + Xcc-8004.4618.1 0.14 -0.1
4,403,628 + Xcc-8004.4618.1 0.14 -0.1
4,403,628 + Xcc-8004.4618.1 0.14 -0.5
4,403,628 + Xcc-8004.4618.1 0.14 -2.4
4,403,629 - Xcc-8004.4618.1 0.14 -1.0
4,403,629 - Xcc-8004.4618.1 0.14 +0.3
4,403,629 - Xcc-8004.4618.1 0.14 +0.8
4,403,629 - Xcc-8004.4618.1 0.14 -0.0
4,403,629 - Xcc-8004.4618.1 0.14 +0.6
4,403,629 - Xcc-8004.4618.1 0.14 +1.6
4,403,629 - Xcc-8004.4618.1 0.14 +1.2
4,403,673 + Xcc-8004.4618.1 0.23 +2.6
4,403,673 + Xcc-8004.4618.1 0.23 +0.4
4,403,673 + Xcc-8004.4618.1 0.23 +0.9
4,403,673 + Xcc-8004.4618.1 0.23 -0.1
4,403,674 - Xcc-8004.4618.1 0.23 -0.4
4,403,674 - Xcc-8004.4618.1 0.23 +1.4
4,403,674 - Xcc-8004.4618.1 0.23 +0.5
4,403,742 + Xcc-8004.4618.1 0.37 +0.3
4,403,748 + Xcc-8004.4618.1 0.38 -0.9
4,403,748 + Xcc-8004.4618.1 0.38 +0.9
4,403,749 - Xcc-8004.4618.1 0.39 -0.6
4,403,749 - Xcc-8004.4618.1 0.39 -0.7
4,403,772 + Xcc-8004.4618.1 0.43 -0.0
4,403,772 + Xcc-8004.4618.1 0.43 +0.1
4,403,772 + Xcc-8004.4618.1 0.43 -2.6
4,403,772 + Xcc-8004.4618.1 0.43 -0.9
4,403,772 + Xcc-8004.4618.1 0.43 -0.1
4,403,773 - Xcc-8004.4618.1 0.43 -1.4
4,403,773 - Xcc-8004.4618.1 0.43 -2.0
4,403,773 - Xcc-8004.4618.1 0.43 -0.7
4,403,773 - Xcc-8004.4618.1 0.43 +2.5
4,403,773 - Xcc-8004.4618.1 0.43 -1.2
4,403,778 + Xcc-8004.4618.1 0.44 +0.4
4,403,778 + Xcc-8004.4618.1 0.44 -2.8
4,403,778 + Xcc-8004.4618.1 0.44 +0.1
4,403,778 + Xcc-8004.4618.1 0.44 -1.1
4,403,778 + Xcc-8004.4618.1 0.44 +1.3
4,403,779 - Xcc-8004.4618.1 0.45 -0.1
4,403,779 - Xcc-8004.4618.1 0.45 -2.9
4,403,779 - Xcc-8004.4618.1 0.45 +0.7
4,403,779 - Xcc-8004.4618.1 0.45 -0.8
4,403,779 - Xcc-8004.4618.1 0.45 +1.4
4,403,779 - Xcc-8004.4618.1 0.45 +0.3
4,404,042 + +0.2
4,404,042 + -0.4
4,404,042 + -1.0
4,404,042 + -1.9
4,404,042 + +1.9
4,404,042 + -2.9
4,404,042 + -0.3
4,404,042 + +0.1
4,404,043 - +0.7
4,404,043 - +1.1
4,404,043 - +0.7
4,404,133 + +2.0
4,404,424 + Xcc-8004.4619.1 0.40 +0.1
4,404,424 + Xcc-8004.4619.1 0.40 +0.4
4,404,425 - Xcc-8004.4619.1 0.40 +3.7
4,404,481 + Xcc-8004.4619.1 0.48 -0.7
4,404,481 + Xcc-8004.4619.1 0.48 +0.9
4,404,481 + Xcc-8004.4619.1 0.48 +0.3
4,404,481 + Xcc-8004.4619.1 0.48 -0.3
4,404,481 + Xcc-8004.4619.1 0.48 -1.1
4,404,482 - Xcc-8004.4619.1 0.49 +0.2
4,404,482 - Xcc-8004.4619.1 0.49 -1.0
4,404,482 - Xcc-8004.4619.1 0.49 -1.9
4,404,482 - Xcc-8004.4619.1 0.49 +1.5
4,404,482 - Xcc-8004.4619.1 0.49 -0.5
4,404,482 - Xcc-8004.4619.1 0.49 -0.7
4,404,565 + Xcc-8004.4619.1 0.61 +1.7
4,404,565 + Xcc-8004.4619.1 0.61 -0.6
4,404,565 + Xcc-8004.4619.1 0.61 +0.3
4,404,566 - Xcc-8004.4619.1 0.61 +1.0
4,404,619 + Xcc-8004.4619.1 0.69 +0.8
4,404,619 + Xcc-8004.4619.1 0.69 -0.5
4,404,619 + Xcc-8004.4619.1 0.69 -0.9
4,404,619 + Xcc-8004.4619.1 0.69 +0.4
4,404,620 - Xcc-8004.4619.1 0.69 -0.7
4,404,620 - Xcc-8004.4619.1 0.69 +0.2
4,404,620 - Xcc-8004.4619.1 0.69 -0.4
4,404,620 - Xcc-8004.4619.1 0.69 +2.1
4,404,620 - Xcc-8004.4619.1 0.69 +0.6
4,404,620 - Xcc-8004.4619.1 0.69 -0.3
4,404,620 - Xcc-8004.4619.1 0.69 -1.1
4,404,643 + Xcc-8004.4619.1 0.72 +1.4
4,404,643 + Xcc-8004.4619.1 0.72 -0.6
4,404,643 + Xcc-8004.4619.1 0.72 +0.1
4,404,643 + Xcc-8004.4619.1 0.72 +1.0
4,404,644 - Xcc-8004.4619.1 0.72 -0.8
4,404,644 - Xcc-8004.4619.1 0.72 -0.9
4,404,644 - Xcc-8004.4619.1 0.72 -0.1
4,404,816 + +0.4
4,404,817 - +0.0
4,404,940 + +1.8
4,404,940 + +0.5
4,404,969 + -2.2
4,404,970 - -0.4
4,405,006 + +0.0
4,405,007 - +0.3
4,405,007 - +0.5
4,405,007 - +0.1
4,405,045 + -0.5
4,405,045 + -0.5
4,405,045 + -2.5
4,405,045 + +0.3
4,405,046 - -0.5
4,405,046 - +0.3
4,405,046 - -1.1
4,405,046 - -2.6
4,405,046 - -1.3
4,405,241 - Xcc-8004.4620.1 0.24 -1.8
4,405,252 + Xcc-8004.4620.1 0.25 -1.4
4,405,252 + Xcc-8004.4620.1 0.25 -2.4
4,405,253 - Xcc-8004.4620.1 0.25 -0.5
4,405,309 + Xcc-8004.4620.1 0.30 -1.6
4,405,309 + Xcc-8004.4620.1 0.30 -1.1
4,405,426 + Xcc-8004.4620.1 0.41 -0.8
4,405,426 + Xcc-8004.4620.1 0.41 +0.3
4,405,427 - Xcc-8004.4620.1 0.41 -1.8
4,405,427 - Xcc-8004.4620.1 0.41 -0.8
4,405,427 - Xcc-8004.4620.1 0.41 -1.2
4,405,782 + Xcc-8004.4620.1 0.74 -2.2
4,405,782 + Xcc-8004.4620.1 0.74 +0.3
4,405,782 + Xcc-8004.4620.1 0.74 -1.3
4,405,782 + Xcc-8004.4620.1 0.74 -2.4
4,405,782 + Xcc-8004.4620.1 0.74 -0.0
4,405,782 + Xcc-8004.4620.1 0.74 -1.6
4,405,782 + Xcc-8004.4620.1 0.74 -1.4
4,405,782 + Xcc-8004.4620.1 0.74 +1.3
4,405,782 + Xcc-8004.4620.1 0.74 -0.5
4,405,782 + Xcc-8004.4620.1 0.74 -1.8
4,405,782 + Xcc-8004.4620.1 0.74 -0.7
4,405,782 + Xcc-8004.4620.1 0.74 -2.4
4,405,782 + Xcc-8004.4620.1 0.74 -2.6
4,405,782 + Xcc-8004.4620.1 0.74 +3.3
4,405,782 + Xcc-8004.4620.1 0.74 -2.3
4,405,782 + Xcc-8004.4620.1 0.74 -1.4
4,405,783 - Xcc-8004.4620.1 0.74 -1.4
4,405,783 - Xcc-8004.4620.1 0.74 -2.0
4,405,783 - Xcc-8004.4620.1 0.74 -1.0
4,405,783 - Xcc-8004.4620.1 0.74 -1.9
4,405,783 - Xcc-8004.4620.1 0.74 -0.9
4,405,783 - Xcc-8004.4620.1 0.74 -1.3
4,405,783 - Xcc-8004.4620.1 0.74 -1.4
4,405,783 - Xcc-8004.4620.1 0.74 -0.8
4,405,783 - Xcc-8004.4620.1 0.74 -0.8
4,405,783 - Xcc-8004.4620.1 0.74 -1.4
4,405,783 - Xcc-8004.4620.1 0.74 +0.0
4,405,783 - Xcc-8004.4620.1 0.74 +0.0

Or see this region's nucleotide sequence