Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3685.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3684.1 and Xcc-8004.3685.1 are separated by 550 nucleotidesXcc-8004.3685.1 and Xcc-8004.3686.1 are separated by 16 nucleotides Xcc-8004.3684.1: Xcc-8004.3684.1 - Cobalt-zinc-cadmium resistance protein CzcD, at 3,562,273 to 3,563,238 Xcc-8004.3684.1 Xcc-8004.3685.1: Xcc-8004.3685.1 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 3,563,789 to 3,564,676 Xcc-8004.3685.1 Xcc-8004.3686.1: Xcc-8004.3686.1 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4), at 3,564,693 to 3,565,865 Xcc-8004.3686.1 Position (kb) 3563 3564 3565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3562.894 kb on - strand, within Xcc-8004.3684.1at 3562.894 kb on - strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.935 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.937 kb on + strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3562.938 kb on - strand, within Xcc-8004.3684.1at 3563.000 kb on + strand, within Xcc-8004.3684.1at 3563.001 kb on - strand, within Xcc-8004.3684.1at 3563.001 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.007 kb on - strand, within Xcc-8004.3684.1at 3563.010 kb on + strand, within Xcc-8004.3684.1at 3563.010 kb on + strand, within Xcc-8004.3684.1at 3563.010 kb on + strand, within Xcc-8004.3684.1at 3563.011 kb on - strand, within Xcc-8004.3684.1at 3563.011 kb on - strand, within Xcc-8004.3684.1at 3563.270 kb on + strandat 3563.271 kb on - strandat 3563.293 kb on + strandat 3563.293 kb on + strandat 3563.293 kb on + strandat 3563.293 kb on + strandat 3563.294 kb on - strandat 3563.294 kb on - strandat 3563.294 kb on - strandat 3563.294 kb on - strandat 3563.296 kb on + strandat 3563.296 kb on + strandat 3563.297 kb on - strandat 3563.297 kb on - strandat 3563.297 kb on - strandat 3563.297 kb on - strandat 3563.346 kb on - strandat 3563.457 kb on + strandat 3563.458 kb on - strandat 3563.458 kb on - strandat 3563.458 kb on - strandat 3563.602 kb on + strandat 3563.602 kb on + strandat 3563.602 kb on + strandat 3563.602 kb on + strandat 3563.603 kb on - strandat 3563.603 kb on - strandat 3563.603 kb on - strandat 3563.610 kb on + strandat 3563.610 kb on + strandat 3563.610 kb on + strandat 3563.610 kb on + strandat 3563.611 kb on - strandat 3563.611 kb on - strandat 3563.611 kb on - strandat 3563.695 kb on - strandat 3563.716 kb on + strandat 3563.716 kb on + strandat 3563.717 kb on - strandat 3563.717 kb on - strandat 3563.717 kb on - strandat 3563.717 kb on - strandat 3563.769 kb on - strandat 3563.769 kb on - strandat 3563.777 kb on + strandat 3563.863 kb on - strandat 3563.863 kb on - strandat 3564.453 kb on + strand, within Xcc-8004.3685.1at 3564.453 kb on + strand, within Xcc-8004.3685.1at 3564.453 kb on + strand, within Xcc-8004.3685.1at 3564.453 kb on + strand, within Xcc-8004.3685.1at 3564.454 kb on - strand, within Xcc-8004.3685.1at 3564.454 kb on - strand, within Xcc-8004.3685.1at 3564.454 kb on - strand, within Xcc-8004.3685.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3565.029 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.255 kb on + strand, within Xcc-8004.3686.1at 3565.517 kb on - strand, within Xcc-8004.3686.1at 3565.618 kb on + strand, within Xcc-8004.3686.1at 3565.618 kb on + strand, within Xcc-8004.3686.1at 3565.619 kb on - strand, within Xcc-8004.3686.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,562,894 - Xcc-8004.3684.1 0.64 +1.7
3,562,894 - Xcc-8004.3684.1 0.64 +2.2
3,562,935 + Xcc-8004.3684.1 0.69 -0.9
3,562,935 + Xcc-8004.3684.1 0.69 -0.2
3,562,935 + Xcc-8004.3684.1 0.69 +1.2
3,562,935 + Xcc-8004.3684.1 0.69 +0.7
3,562,935 + Xcc-8004.3684.1 0.69 +2.8
3,562,937 + Xcc-8004.3684.1 0.69 +0.2
3,562,937 + Xcc-8004.3684.1 0.69 +0.5
3,562,937 + Xcc-8004.3684.1 0.69 +0.8
3,562,937 + Xcc-8004.3684.1 0.69 +1.1
3,562,937 + Xcc-8004.3684.1 0.69 +0.4
3,562,938 - Xcc-8004.3684.1 0.69 +2.3
3,562,938 - Xcc-8004.3684.1 0.69 -1.0
3,562,938 - Xcc-8004.3684.1 0.69 +0.0
3,562,938 - Xcc-8004.3684.1 0.69 -0.6
3,562,938 - Xcc-8004.3684.1 0.69 -0.3
3,562,938 - Xcc-8004.3684.1 0.69 -0.6
3,562,938 - Xcc-8004.3684.1 0.69 +0.2
3,562,938 - Xcc-8004.3684.1 0.69 -2.7
3,562,938 - Xcc-8004.3684.1 0.69 -0.1
3,562,938 - Xcc-8004.3684.1 0.69 -1.1
3,563,000 + Xcc-8004.3684.1 0.75 -0.3
3,563,001 - Xcc-8004.3684.1 0.75 -0.3
3,563,001 - Xcc-8004.3684.1 0.75 -1.9
3,563,007 - Xcc-8004.3684.1 0.76 -0.8
3,563,007 - Xcc-8004.3684.1 0.76 -1.1
3,563,007 - Xcc-8004.3684.1 0.76 -0.0
3,563,007 - Xcc-8004.3684.1 0.76 +1.3
3,563,007 - Xcc-8004.3684.1 0.76 +0.5
3,563,007 - Xcc-8004.3684.1 0.76 +0.7
3,563,010 + Xcc-8004.3684.1 0.76 +1.0
3,563,010 + Xcc-8004.3684.1 0.76 -0.1
3,563,010 + Xcc-8004.3684.1 0.76 +0.3
3,563,011 - Xcc-8004.3684.1 0.76 +0.3
3,563,011 - Xcc-8004.3684.1 0.76 -1.7
3,563,270 + +0.6
3,563,271 - -0.9
3,563,293 + -0.4
3,563,293 + +0.7
3,563,293 + -1.3
3,563,293 + -0.0
3,563,294 - +1.3
3,563,294 - -1.1
3,563,294 - -0.3
3,563,294 - -0.2
3,563,296 + +0.1
3,563,296 + -1.0
3,563,297 - +0.2
3,563,297 - -0.7
3,563,297 - +0.8
3,563,297 - -1.7
3,563,346 - +2.1
3,563,457 + -0.1
3,563,458 - -0.2
3,563,458 - +0.1
3,563,458 - +0.5
3,563,602 + -0.6
3,563,602 + -0.4
3,563,602 + +0.2
3,563,602 + -1.7
3,563,603 - +0.5
3,563,603 - -0.9
3,563,603 - +0.7
3,563,610 + -1.1
3,563,610 + -0.5
3,563,610 + +0.9
3,563,610 + -0.2
3,563,611 - +0.6
3,563,611 - -2.0
3,563,611 - -0.3
3,563,695 - +0.6
3,563,716 + +0.1
3,563,716 + +1.2
3,563,717 - +0.4
3,563,717 - +0.5
3,563,717 - +0.4
3,563,717 - +0.7
3,563,769 - +0.9
3,563,769 - -0.6
3,563,777 + -0.8
3,563,863 - +2.9
3,563,863 - +0.7
3,564,453 + Xcc-8004.3685.1 0.75 -0.9
3,564,453 + Xcc-8004.3685.1 0.75 +0.0
3,564,453 + Xcc-8004.3685.1 0.75 +0.4
3,564,453 + Xcc-8004.3685.1 0.75 -0.4
3,564,454 - Xcc-8004.3685.1 0.75 -0.0
3,564,454 - Xcc-8004.3685.1 0.75 -1.0
3,564,454 - Xcc-8004.3685.1 0.75 -1.4
3,564,886 + Xcc-8004.3686.1 0.16 -0.4
3,564,886 + Xcc-8004.3686.1 0.16 +0.1
3,564,886 + Xcc-8004.3686.1 0.16 -1.3
3,564,886 + Xcc-8004.3686.1 0.16 -1.3
3,564,886 + Xcc-8004.3686.1 0.16 -0.4
3,564,886 + Xcc-8004.3686.1 0.16 +1.6
3,564,886 + Xcc-8004.3686.1 0.16 -1.5
3,564,887 - Xcc-8004.3686.1 0.17 -2.9
3,564,887 - Xcc-8004.3686.1 0.17 -2.3
3,564,887 - Xcc-8004.3686.1 0.17 -0.7
3,564,887 - Xcc-8004.3686.1 0.17 -1.6
3,565,029 + Xcc-8004.3686.1 0.29 -1.3
3,565,216 + Xcc-8004.3686.1 0.45 -1.1
3,565,216 + Xcc-8004.3686.1 0.45 -1.2
3,565,216 + Xcc-8004.3686.1 0.45 -1.1
3,565,216 + Xcc-8004.3686.1 0.45 -0.4
3,565,216 + Xcc-8004.3686.1 0.45 -1.8
3,565,216 + Xcc-8004.3686.1 0.45 +0.2
3,565,216 + Xcc-8004.3686.1 0.45 +0.7
3,565,217 - Xcc-8004.3686.1 0.45 -2.4
3,565,217 - Xcc-8004.3686.1 0.45 -1.0
3,565,217 - Xcc-8004.3686.1 0.45 +0.5
3,565,217 - Xcc-8004.3686.1 0.45 +0.5
3,565,255 + Xcc-8004.3686.1 0.48 -0.9
3,565,517 - Xcc-8004.3686.1 0.70 -0.9
3,565,618 + Xcc-8004.3686.1 0.79 -0.8
3,565,618 + Xcc-8004.3686.1 0.79 -1.6
3,565,619 - Xcc-8004.3686.1 0.79 -2.0

Or see this region's nucleotide sequence