Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1186.1

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1185.1 and Xcc-8004.1186.1 overlap by 4 nucleotidesXcc-8004.1186.1 and Xcc-8004.1187.1 overlap by 4 nucleotidesXcc-8004.1187.1 and Xcc-8004.1188.1 are separated by 20 nucleotides Xcc-8004.1185.1: Xcc-8004.1185.1 - BatA (Bacteroides aerotolerance operon), at 1,121,038 to 1,122,045 Xcc-8004.1185.1 Xcc-8004.1186.1: Xcc-8004.1186.1 - FIG01211734: hypothetical protein, at 1,122,042 to 1,122,497 Xcc-8004.1186.1 Xcc-8004.1187.1: Xcc-8004.1187.1 - hypothetical protein PA3071, at 1,122,494 to 1,123,465 Xcc-8004.1187.1 Xcc-8004.1188.1: Xcc-8004.1188.1 - MoxR-like ATPase in aerotolerance operon, at 1,123,486 to 1,124,505 Xcc-8004.1188.1 Position (kb) 1122 1123Strain fitness (log2 ratio) -2 -1 0 1 2at 1121.105 kb on + strandat 1121.105 kb on + strandat 1121.108 kb on + strandat 1121.108 kb on + strandat 1121.109 kb on - strandat 1121.109 kb on - strandat 1121.177 kb on + strand, within Xcc-8004.1185.1at 1121.178 kb on - strand, within Xcc-8004.1185.1at 1121.309 kb on + strand, within Xcc-8004.1185.1at 1121.309 kb on + strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.347 kb on + strand, within Xcc-8004.1185.1at 1121.582 kb on + strand, within Xcc-8004.1185.1at 1121.583 kb on - strand, within Xcc-8004.1185.1at 1121.583 kb on - strand, within Xcc-8004.1185.1at 1121.599 kb on + strand, within Xcc-8004.1185.1at 1121.600 kb on - strand, within Xcc-8004.1185.1at 1121.903 kb on + strand, within Xcc-8004.1185.1at 1121.904 kb on - strand, within Xcc-8004.1185.1at 1122.517 kb on + strandat 1122.517 kb on + strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.854 kb on + strand, within Xcc-8004.1187.1at 1122.854 kb on + strand, within Xcc-8004.1187.1at 1122.918 kb on + strand, within Xcc-8004.1187.1at 1122.919 kb on - strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.083 kb on + strand, within Xcc-8004.1187.1at 1123.084 kb on - strand, within Xcc-8004.1187.1at 1123.210 kb on + strand, within Xcc-8004.1187.1at 1123.210 kb on + strand, within Xcc-8004.1187.1at 1123.237 kb on - strand, within Xcc-8004.1187.1at 1123.237 kb on - strand, within Xcc-8004.1187.1at 1123.254 kb on + strand, within Xcc-8004.1187.1at 1123.255 kb on - strand, within Xcc-8004.1187.1at 1123.255 kb on - strand, within Xcc-8004.1187.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,121,105 + -1.8
1,121,105 + -0.2
1,121,108 + +0.1
1,121,108 + -1.2
1,121,109 - +0.3
1,121,109 - -1.0
1,121,177 + Xcc-8004.1185.1 0.14 -1.3
1,121,178 - Xcc-8004.1185.1 0.14 -1.4
1,121,309 + Xcc-8004.1185.1 0.27 +0.2
1,121,309 + Xcc-8004.1185.1 0.27 -1.6
1,121,310 - Xcc-8004.1185.1 0.27 +2.1
1,121,310 - Xcc-8004.1185.1 0.27 +1.1
1,121,310 - Xcc-8004.1185.1 0.27 -0.3
1,121,310 - Xcc-8004.1185.1 0.27 -1.5
1,121,347 + Xcc-8004.1185.1 0.31 +0.4
1,121,582 + Xcc-8004.1185.1 0.54 +0.2
1,121,583 - Xcc-8004.1185.1 0.54 -0.5
1,121,583 - Xcc-8004.1185.1 0.54 +0.1
1,121,599 + Xcc-8004.1185.1 0.56 +1.4
1,121,600 - Xcc-8004.1185.1 0.56 -0.2
1,121,903 + Xcc-8004.1185.1 0.86 -1.3
1,121,904 - Xcc-8004.1185.1 0.86 +0.4
1,122,517 + -0.1
1,122,517 + +0.8
1,122,518 - -0.3
1,122,518 - -0.3
1,122,518 - -0.5
1,122,518 - +0.5
1,122,518 - +0.3
1,122,854 + Xcc-8004.1187.1 0.37 +0.2
1,122,854 + Xcc-8004.1187.1 0.37 -0.2
1,122,918 + Xcc-8004.1187.1 0.44 -1.9
1,122,919 - Xcc-8004.1187.1 0.44 +1.2
1,123,083 + Xcc-8004.1187.1 0.61 +0.4
1,123,083 + Xcc-8004.1187.1 0.61 +0.0
1,123,083 + Xcc-8004.1187.1 0.61 +0.4
1,123,083 + Xcc-8004.1187.1 0.61 +0.9
1,123,083 + Xcc-8004.1187.1 0.61 -0.3
1,123,083 + Xcc-8004.1187.1 0.61 +1.7
1,123,083 + Xcc-8004.1187.1 0.61 -1.4
1,123,083 + Xcc-8004.1187.1 0.61 -1.6
1,123,083 + Xcc-8004.1187.1 0.61 +0.3
1,123,084 - Xcc-8004.1187.1 0.61 +0.7
1,123,210 + Xcc-8004.1187.1 0.74 -0.5
1,123,210 + Xcc-8004.1187.1 0.74 +0.3
1,123,237 - Xcc-8004.1187.1 0.76 -1.1
1,123,237 - Xcc-8004.1187.1 0.76 -0.1
1,123,254 + Xcc-8004.1187.1 0.78 -1.0
1,123,255 - Xcc-8004.1187.1 0.78 +0.9
1,123,255 - Xcc-8004.1187.1 0.78 -0.4

Or see this region's nucleotide sequence