Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1183.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1181.1 and Xcc-8004.1183.1 are separated by 565 nucleotidesXcc-8004.1183.1 and Xcc-8004.1184.1 overlap by 4 nucleotides Xcc-8004.1181.1: Xcc-8004.1181.1 - Proton/glutamate symport protein @ Sodium/glutamate symport protein, at 1,115,651 to 1,116,931 Xcc-8004.1181.1 Xcc-8004.1183.1: Xcc-8004.1183.1 - BatD, at 1,117,497 to 1,119,236 Xcc-8004.1183.1 Xcc-8004.1184.1: Xcc-8004.1184.1 - TPR domain protein in aerotolerance operon, at 1,119,233 to 1,121,041 Xcc-8004.1184.1 Position (kb) 1117 1118 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1116.642 kb on + strand, within Xcc-8004.1181.1at 1116.642 kb on + strand, within Xcc-8004.1181.1at 1116.786 kb on + strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.787 kb on - strand, within Xcc-8004.1181.1at 1116.831 kb on + strandat 1116.831 kb on + strandat 1116.831 kb on + strandat 1116.832 kb on - strandat 1116.832 kb on - strandat 1116.834 kb on + strandat 1116.835 kb on - strandat 1116.835 kb on - strandat 1116.835 kb on - strandat 1116.970 kb on - strandat 1116.995 kb on + strandat 1116.995 kb on + strandat 1116.996 kb on - strandat 1117.023 kb on + strandat 1117.023 kb on + strandat 1117.024 kb on - strandat 1117.029 kb on - strandat 1117.169 kb on - strandat 1117.259 kb on - strandat 1117.268 kb on + strandat 1117.268 kb on + strandat 1117.268 kb on + strandat 1117.268 kb on + strandat 1117.269 kb on - strandat 1117.269 kb on - strandat 1117.360 kb on + strandat 1117.360 kb on + strandat 1117.361 kb on - strandat 1117.361 kb on - strandat 1117.361 kb on - strandat 1117.361 kb on - strandat 1117.447 kb on - strandat 1117.447 kb on - strandat 1117.718 kb on + strand, within Xcc-8004.1183.1at 1117.718 kb on + strand, within Xcc-8004.1183.1at 1118.239 kb on + strand, within Xcc-8004.1183.1at 1118.240 kb on - strand, within Xcc-8004.1183.1at 1118.386 kb on + strand, within Xcc-8004.1183.1at 1118.387 kb on - strand, within Xcc-8004.1183.1at 1118.506 kb on + strand, within Xcc-8004.1183.1at 1118.506 kb on + strand, within Xcc-8004.1183.1at 1118.507 kb on - strand, within Xcc-8004.1183.1at 1118.507 kb on - strand, within Xcc-8004.1183.1at 1118.614 kb on + strand, within Xcc-8004.1183.1at 1118.614 kb on + strand, within Xcc-8004.1183.1at 1118.615 kb on - strand, within Xcc-8004.1183.1at 1118.615 kb on - strand, within Xcc-8004.1183.1at 1118.615 kb on - strand, within Xcc-8004.1183.1at 1118.725 kb on + strand, within Xcc-8004.1183.1at 1118.725 kb on + strand, within Xcc-8004.1183.1at 1118.725 kb on + strand, within Xcc-8004.1183.1at 1118.725 kb on + strand, within Xcc-8004.1183.1at 1118.725 kb on + strand, within Xcc-8004.1183.1at 1118.725 kb on + strand, within Xcc-8004.1183.1at 1118.726 kb on - strand, within Xcc-8004.1183.1at 1118.726 kb on - strand, within Xcc-8004.1183.1at 1118.728 kb on + strand, within Xcc-8004.1183.1at 1118.728 kb on + strand, within Xcc-8004.1183.1at 1118.728 kb on + strand, within Xcc-8004.1183.1at 1118.729 kb on - strand, within Xcc-8004.1183.1at 1118.764 kb on + strand, within Xcc-8004.1183.1at 1118.765 kb on - strand, within Xcc-8004.1183.1at 1118.765 kb on - strand, within Xcc-8004.1183.1at 1118.765 kb on - strand, within Xcc-8004.1183.1at 1119.058 kb on + strand, within Xcc-8004.1183.1at 1119.725 kb on - strand, within Xcc-8004.1184.1at 1119.725 kb on - strand, within Xcc-8004.1184.1at 1119.725 kb on - strand, within Xcc-8004.1184.1at 1119.816 kb on + strand, within Xcc-8004.1184.1at 1119.816 kb on + strand, within Xcc-8004.1184.1at 1119.874 kb on - strand, within Xcc-8004.1184.1at 1119.934 kb on + strand, within Xcc-8004.1184.1at 1119.940 kb on - strand, within Xcc-8004.1184.1at 1119.940 kb on - strand, within Xcc-8004.1184.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,116,642 + Xcc-8004.1181.1 0.77 -1.8
1,116,642 + Xcc-8004.1181.1 0.77 -0.9
1,116,786 + Xcc-8004.1181.1 0.89 -1.0
1,116,787 - Xcc-8004.1181.1 0.89 -1.7
1,116,787 - Xcc-8004.1181.1 0.89 -2.3
1,116,787 - Xcc-8004.1181.1 0.89 +1.4
1,116,787 - Xcc-8004.1181.1 0.89 -0.3
1,116,787 - Xcc-8004.1181.1 0.89 +0.2
1,116,787 - Xcc-8004.1181.1 0.89 +0.9
1,116,787 - Xcc-8004.1181.1 0.89 +3.9
1,116,787 - Xcc-8004.1181.1 0.89 -2.3
1,116,831 + -1.6
1,116,831 + +0.3
1,116,831 + -1.4
1,116,832 - +1.1
1,116,832 - -1.6
1,116,834 + +0.2
1,116,835 - -0.4
1,116,835 - +0.1
1,116,835 - +0.4
1,116,970 - +2.3
1,116,995 + +0.5
1,116,995 + -0.1
1,116,996 - -0.3
1,117,023 + +1.1
1,117,023 + +1.2
1,117,024 - -0.9
1,117,029 - -0.9
1,117,169 - +0.2
1,117,259 - +0.2
1,117,268 + +0.3
1,117,268 + -0.9
1,117,268 + +1.8
1,117,268 + -2.1
1,117,269 - -0.3
1,117,269 - -1.1
1,117,360 + -0.3
1,117,360 + -0.8
1,117,361 - +0.2
1,117,361 - -0.6
1,117,361 - +2.3
1,117,361 - -0.1
1,117,447 - -0.2
1,117,447 - -0.0
1,117,718 + Xcc-8004.1183.1 0.13 +0.1
1,117,718 + Xcc-8004.1183.1 0.13 +1.0
1,118,239 + Xcc-8004.1183.1 0.43 -0.1
1,118,240 - Xcc-8004.1183.1 0.43 -1.2
1,118,386 + Xcc-8004.1183.1 0.51 +0.0
1,118,387 - Xcc-8004.1183.1 0.51 -0.6
1,118,506 + Xcc-8004.1183.1 0.58 -0.1
1,118,506 + Xcc-8004.1183.1 0.58 +2.9
1,118,507 - Xcc-8004.1183.1 0.58 -0.7
1,118,507 - Xcc-8004.1183.1 0.58 -0.8
1,118,614 + Xcc-8004.1183.1 0.64 +0.3
1,118,614 + Xcc-8004.1183.1 0.64 +0.4
1,118,615 - Xcc-8004.1183.1 0.64 -0.2
1,118,615 - Xcc-8004.1183.1 0.64 -1.1
1,118,615 - Xcc-8004.1183.1 0.64 -1.4
1,118,725 + Xcc-8004.1183.1 0.71 +0.3
1,118,725 + Xcc-8004.1183.1 0.71 +0.4
1,118,725 + Xcc-8004.1183.1 0.71 +0.2
1,118,725 + Xcc-8004.1183.1 0.71 -0.8
1,118,725 + Xcc-8004.1183.1 0.71 +1.6
1,118,725 + Xcc-8004.1183.1 0.71 -0.6
1,118,726 - Xcc-8004.1183.1 0.71 +1.0
1,118,726 - Xcc-8004.1183.1 0.71 -0.8
1,118,728 + Xcc-8004.1183.1 0.71 -1.8
1,118,728 + Xcc-8004.1183.1 0.71 -0.6
1,118,728 + Xcc-8004.1183.1 0.71 -0.5
1,118,729 - Xcc-8004.1183.1 0.71 -0.6
1,118,764 + Xcc-8004.1183.1 0.73 -0.0
1,118,765 - Xcc-8004.1183.1 0.73 -1.6
1,118,765 - Xcc-8004.1183.1 0.73 +1.3
1,118,765 - Xcc-8004.1183.1 0.73 +0.2
1,119,058 + Xcc-8004.1183.1 0.90 -0.1
1,119,725 - Xcc-8004.1184.1 0.27 +0.9
1,119,725 - Xcc-8004.1184.1 0.27 +0.4
1,119,725 - Xcc-8004.1184.1 0.27 -0.5
1,119,816 + Xcc-8004.1184.1 0.32 -0.8
1,119,816 + Xcc-8004.1184.1 0.32 +0.2
1,119,874 - Xcc-8004.1184.1 0.35 +0.3
1,119,934 + Xcc-8004.1184.1 0.39 -0.5
1,119,940 - Xcc-8004.1184.1 0.39 -0.9
1,119,940 - Xcc-8004.1184.1 0.39 -0.7

Or see this region's nucleotide sequence