Strain Fitness in Pantoea sp. MT58 around IAI47_10230

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
2,160,088	+		IAI47_10220	0.32	+0.4
2,160,088	+		IAI47_10220	0.32	+1.6
2,160,122	+		IAI47_10220	0.36	-0.3
2,160,122	+		IAI47_10220	0.36	+0.4
2,160,123	-		IAI47_10220	0.36	+1.9
2,160,206	+		IAI47_10220	0.45	+0.4
2,160,206	+		IAI47_10220	0.45	+2.5
2,160,206	+		IAI47_10220	0.45	+0.5
2,160,225	+		IAI47_10220	0.47	+1.6
2,160,226	-		IAI47_10220	0.47	+0.1
2,160,304	+		IAI47_10220	0.56	+0.4
2,160,304	+		IAI47_10220	0.56	-0.4
2,160,304	+		IAI47_10220	0.56	+0.9
2,160,304	+		IAI47_10220	0.56	+1.3
2,160,305	-		IAI47_10220	0.56	+0.6
2,160,305	-		IAI47_10220	0.56	+0.8
2,160,378	+		IAI47_10220	0.64	-0.4
2,160,378	+		IAI47_10220	0.64	-0.3
2,160,510	+		IAI47_10220	0.78	+2.5
2,160,511	-		IAI47_10220	0.78	+1.6
2,160,511	-		IAI47_10220	0.78	+2.0
2,160,511	-		IAI47_10220	0.78	+0.8
2,160,511	-		IAI47_10220	0.78	+0.6
2,160,511	-		IAI47_10220	0.78	+1.1
2,160,550	+		IAI47_10220	0.83	+0.2
2,160,550	+		IAI47_10220	0.83	-0.4
2,160,550	+		IAI47_10220	0.83	-0.9
2,160,550	+		IAI47_10220	0.83	-0.9
2,160,551	-		IAI47_10220	0.83	+1.4
2,160,551	-		IAI47_10220	0.83	+0.4
2,160,551	-		IAI47_10220	0.83	+1.4
2,160,551	-		IAI47_10220	0.83	+0.9
2,160,551	-		IAI47_10220	0.83	-1.1
2,160,551	-		IAI47_10220	0.83	+1.3
2,160,582	+		IAI47_10220	0.86	-0.6
2,160,583	-		IAI47_10220	0.86	+0.3
2,160,624	+				+0.3
2,160,625	-				+0.2
2,160,625	-				+0.5
2,160,651	+				+1.1
2,160,651	+				+0.4
2,160,651	+				-1.4
2,160,651	+				-0.2
2,160,651	+				+1.3
2,160,652	-				+0.2
2,160,652	-				-0.1
2,160,702	+				+1.1
2,160,708	+				+0.3
2,160,708	+				-0.7
2,160,708	+				-0.6
2,160,708	+				+1.7
2,160,709	-				+0.5
2,160,709	-				-0.1
2,160,765	-				+0.1
2,160,779	+		IAI47_10225	0.22	-0.1
2,160,779	+		IAI47_10225	0.22	-1.0
2,160,779	+		IAI47_10225	0.22	-0.9
2,160,780	-		IAI47_10225	0.24	+1.4
2,160,780	-		IAI47_10225	0.24	-1.7
2,160,780	-		IAI47_10225	0.24	+0.9
2,160,780	-		IAI47_10225	0.24	+0.1
2,160,780	-		IAI47_10225	0.24	+1.5
2,160,807	+		IAI47_10225	0.61	-0.4
2,160,807	+		IAI47_10225	0.61	+0.4
2,160,808	-		IAI47_10225	0.62	+1.3
2,160,808	-		IAI47_10225	0.62	-0.4
2,160,808	-		IAI47_10225	0.62	-0.7
2,160,808	-		IAI47_10225	0.62	+0.2
2,160,808	-		IAI47_10225	0.62	+0.5
2,160,839	+				-0.9
2,160,839	+				-1.7
2,160,839	+				+0.5
2,160,839	+				-0.2
2,160,839	+				+0.3
2,160,840	-				+0.7
2,160,840	-				+0.5
2,160,840	-				+1.5
2,160,860	-				+0.5
2,161,048	+				+0.3
2,161,048	+				+0.6
2,161,048	+				+1.3
2,161,049	-				+1.6
2,161,049	-				-1.1
2,161,164	+		IAI47_10230	0.18	+0.8
2,161,165	-		IAI47_10230	0.18	+1.1
2,161,203	+		IAI47_10230	0.22	+1.3
2,161,227	-		IAI47_10230	0.24	+0.5
2,161,259	+		IAI47_10230	0.28	-0.2
2,161,680	-		IAI47_10230	0.69	+0.2
2,161,680	-		IAI47_10230	0.69	+0.4
2,161,680	-		IAI47_10230	0.69	+2.5
2,161,680	-		IAI47_10230	0.69	+0.0
2,161,682	+		IAI47_10230	0.69	-0.9
2,161,682	+		IAI47_10230	0.69	-1.1
2,161,682	+		IAI47_10230	0.69	+0.8
2,161,682	+		IAI47_10230	0.69	-0.7
2,161,683	-		IAI47_10230	0.69	+1.3
2,161,683	-		IAI47_10230	0.69	+0.6
2,161,817	+		IAI47_10230	0.82	+1.3
2,161,818	-		IAI47_10230	0.83	+1.1
2,161,818	-		IAI47_10230	0.83	+0.8
2,161,818	-		IAI47_10230	0.83	-0.0
2,161,818	-		IAI47_10230	0.83	+1.1
2,161,819	+		IAI47_10230	0.83	+0.6
2,161,819	+		IAI47_10230	0.83	+2.0
2,161,820	-		IAI47_10230	0.83	+1.1
2,161,820	-		IAI47_10230	0.83	-0.5
2,161,820	-		IAI47_10230	0.83	+1.4
2,161,820	-		IAI47_10230	0.83	+0.9
2,161,820	-		IAI47_10230	0.83	+2.0
2,161,820	-		IAI47_10230	0.83	+1.2
2,161,820	-		IAI47_10230	0.83	+1.0
2,161,820	-		IAI47_10230	0.83	+0.5
2,161,820	-		IAI47_10230	0.83	-0.2
2,161,820	-		IAI47_10230	0.83	+2.0
2,161,907	+				+0.6
2,161,908	-				+0.5
2,161,915	+				+2.6
2,161,958	+				+0.7
2,161,959	-				-1.1
2,161,994	+				-0.2
2,161,994	+				-0.5
2,161,994	+				-0.2
2,161,994	+				+0.3
2,161,995	-				+0.9
2,161,995	-				+0.9
2,161,995	-				+0.6
2,161,995	-				+0.9
2,161,995	-				+0.5
2,162,011	-				+2.0
2,162,027	+				+0.4
2,162,027	+				+0.8
2,162,158	+				-0.3
2,162,158	+				-0.2
2,162,158	+				+0.2
2,162,158	+				-1.5
2,162,159	-				-0.2
2,162,159	-				-1.3
2,162,159	-				-0.1
2,162,161	+				-0.1
2,162,161	+				+0.5
2,162,161	+				+0.5
2,162,161	+				+0.7
2,162,162	-				+0.7
2,162,162	-				+0.8
2,162,162	-				-2.8
2,162,162	-				-1.7
2,162,162	-				-0.2
2,162,183	-				+0.6
2,162,183	-				+0.1
2,162,187	-				+0.8
2,162,187	-				-0.4
2,162,187	-				-0.5
2,162,458	-		IAI47_10235	0.17	-0.1
2,162,458	-		IAI47_10235	0.17	+0.6
2,162,458	-		IAI47_10235	0.17	+0.2
2,162,511	+		IAI47_10235	0.20	-0.4
2,162,511	+		IAI47_10235	0.20	+0.2
2,162,512	-		IAI47_10235	0.20	-1.9
2,162,512	-		IAI47_10235	0.20	-0.1
2,162,512	-		IAI47_10235	0.20	-0.3
2,162,512	-		IAI47_10235	0.20	+1.1
2,162,512	-		IAI47_10235	0.20	-1.1
2,162,543	+		IAI47_10235	0.22	-0.8
2,162,543	+		IAI47_10235	0.22	+0.3
2,162,543	+		IAI47_10235	0.22	+0.5
2,162,577	+		IAI47_10235	0.24	-1.1
2,162,578	-		IAI47_10235	0.24	+0.6
2,162,578	-		IAI47_10235	0.24	-0.1
2,162,582	-		IAI47_10235	0.24	-0.1
2,162,604	+		IAI47_10235	0.26	-0.1
2,162,605	-		IAI47_10235	0.26	-0.1
2,162,782	+		IAI47_10235	0.36	+0.5
2,162,782	+		IAI47_10235	0.36	+0.5
2,162,783	-		IAI47_10235	0.36	+0.8
2,162,783	-		IAI47_10235	0.36	-0.5
2,162,783	-		IAI47_10235	0.36	+2.1
2,162,783	-		IAI47_10235	0.36	-1.9
2,162,785	+		IAI47_10235	0.36	+0.6
2,162,785	+		IAI47_10235	0.36	-0.7
2,162,786	-		IAI47_10235	0.36	+0.2
2,162,786	-		IAI47_10235	0.36	+1.1
2,162,786	-		IAI47_10235	0.36	+1.4
2,162,825	+		IAI47_10235	0.39	-1.7
2,162,826	-		IAI47_10235	0.39	-2.2
2,162,826	-		IAI47_10235	0.39	-0.4
2,162,826	-		IAI47_10235	0.39	-0.0
2,162,826	-		IAI47_10235	0.39	-1.3
2,162,882	-		IAI47_10235	0.42	-0.2
2,162,992	+		IAI47_10235	0.48	+0.2
2,162,992	+		IAI47_10235	0.48	+1.6