Experiment: m.b. Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1733 and HP15_1734 are separated by 51 nucleotides HP15_1734 and HP15_1735 are separated by 26 nucleotides HP15_1735 and HP15_1736 are separated by 58 nucleotides HP15_1736 and HP15_1737 are separated by 25 nucleotides
HP15_1733: HP15_1733 - conserved hypothetical protein, at 1,832,443 to 1,832,985
_1733
HP15_1734: HP15_1734 - ABC-type multidrug transport system, ATPase component, at 1,833,037 to 1,833,957
_1734
HP15_1735: HP15_1735 - ABC transporter, permease protein, at 1,833,984 to 1,834,745
_1735
HP15_1736: HP15_1736 - protein containing DUF192, at 1,834,804 to 1,835,259
_1736
HP15_1737: HP15_1737 - enoyl-CoA hydratase/isomerase, at 1,835,285 to 1,836,106
_1737
Position (kb)
1833
1834
1835 Strain fitness (log2 ratio)
-1
0
1 at 1833.485 kb on + strand, within HP15_1734 at 1833.493 kb on - strand, within HP15_1734 at 1833.613 kb on - strand, within HP15_1734 at 1833.821 kb on - strand, within HP15_1734 at 1833.822 kb on - strand, within HP15_1734 at 1834.259 kb on + strand, within HP15_1735 at 1834.290 kb on + strand, within HP15_1735 at 1834.295 kb on + strand, within HP15_1735 at 1834.390 kb on - strand, within HP15_1735 at 1834.747 kb on - strand at 1834.812 kb on + strand at 1834.919 kb on + strand, within HP15_1736 at 1834.919 kb on + strand, within HP15_1736 at 1835.374 kb on + strand, within HP15_1737 at 1835.382 kb on - strand, within HP15_1737 at 1835.382 kb on - strand, within HP15_1737 at 1835.535 kb on + strand, within HP15_1737 at 1835.536 kb on + strand, within HP15_1737 at 1835.562 kb on + strand, within HP15_1737 at 1835.635 kb on + strand, within HP15_1737 at 1835.640 kb on + strand, within HP15_1737 at 1835.640 kb on + strand, within HP15_1737 at 1835.643 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.704 kb on + strand, within HP15_1737
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 1 mg/ml remove 1,833,485 + HP15_1734 0.49 +0.2 1,833,493 - HP15_1734 0.50 -0.2 1,833,613 - HP15_1734 0.63 +0.1 1,833,821 - HP15_1734 0.85 -0.1 1,833,822 - HP15_1734 0.85 +1.6 1,834,259 + HP15_1735 0.36 -0.2 1,834,290 + HP15_1735 0.40 +0.1 1,834,295 + HP15_1735 0.41 +0.5 1,834,390 - HP15_1735 0.53 +0.1 1,834,747 - -0.6 1,834,812 + -0.4 1,834,919 + HP15_1736 0.25 +1.2 1,834,919 + HP15_1736 0.25 -0.7 1,835,374 + HP15_1737 0.11 +0.5 1,835,382 - HP15_1737 0.12 +0.4 1,835,382 - HP15_1737 0.12 +0.3 1,835,535 + HP15_1737 0.30 +0.1 1,835,536 + HP15_1737 0.31 -0.7 1,835,562 + HP15_1737 0.34 +0.0 1,835,635 + HP15_1737 0.43 +0.0 1,835,640 + HP15_1737 0.43 +0.9 1,835,640 + HP15_1737 0.43 -0.4 1,835,643 - HP15_1737 0.44 +0.3 1,835,648 - HP15_1737 0.44 -0.6 1,835,648 - HP15_1737 0.44 +0.3 1,835,648 - HP15_1737 0.44 -0.2 1,835,704 + HP15_1737 0.51 +0.7
Or see this region's nucleotide sequence