Strain Fitness in Marinobacter adhaerens HP15 around HP15_1609

Experiment: m.b. Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1608 and HP15_1609 are separated by 2 nucleotidesHP15_1609 and HP15_1610 are separated by 3 nucleotidesHP15_1610 and HP15_1611 are separated by 56 nucleotides HP15_1608: HP15_1608 - general secretion pathway protein K-like protein, at 1,703,810 to 1,704,814 _1608 HP15_1609: HP15_1609 - general secretion pathway protein L, at 1,704,817 to 1,706,121 _1609 HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655 _1610 HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383 _1611 Position (kb) 1704 1705 1706 1707Strain fitness (log2 ratio) -1 0 1at 1703.819 kb on + strandat 1704.070 kb on + strand, within HP15_1608at 1704.078 kb on - strand, within HP15_1608at 1704.078 kb on - strand, within HP15_1608at 1704.147 kb on - strand, within HP15_1608at 1704.351 kb on - strand, within HP15_1608at 1704.537 kb on - strand, within HP15_1608at 1704.563 kb on + strand, within HP15_1608at 1704.873 kb on - strandat 1704.995 kb on - strand, within HP15_1609at 1705.007 kb on + strand, within HP15_1609at 1705.007 kb on + strand, within HP15_1609at 1705.015 kb on - strand, within HP15_1609at 1705.094 kb on - strand, within HP15_1609at 1705.408 kb on - strand, within HP15_1609at 1705.504 kb on - strand, within HP15_1609at 1705.638 kb on + strand, within HP15_1609at 1706.018 kb on - strandat 1706.215 kb on + strand, within HP15_1610at 1706.531 kb on + strand, within HP15_1610at 1706.596 kb on + strand, within HP15_1610at 1706.604 kb on - strandat 1706.799 kb on - strand, within HP15_1611at 1707.033 kb on + strand, within HP15_1611at 1707.053 kb on - strand, within HP15_1611at 1707.053 kb on - strand, within HP15_1611

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 1 mg/ml
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1,703,819 + +0.8
1,704,070 + HP15_1608 0.26 +1.1
1,704,078 - HP15_1608 0.27 +0.2
1,704,078 - HP15_1608 0.27 +1.4
1,704,147 - HP15_1608 0.34 +0.6
1,704,351 - HP15_1608 0.54 +0.5
1,704,537 - HP15_1608 0.72 +1.0
1,704,563 + HP15_1608 0.75 +0.2
1,704,873 - +0.3
1,704,995 - HP15_1609 0.14 +0.8
1,705,007 + HP15_1609 0.15 +1.4
1,705,007 + HP15_1609 0.15 +0.6
1,705,015 - HP15_1609 0.15 +0.7
1,705,094 - HP15_1609 0.21 +0.2
1,705,408 - HP15_1609 0.45 +0.5
1,705,504 - HP15_1609 0.53 +1.0
1,705,638 + HP15_1609 0.63 +0.6
1,706,018 - +1.1
1,706,215 + HP15_1610 0.17 +1.0
1,706,531 + HP15_1610 0.76 +1.6
1,706,596 + HP15_1610 0.89 +0.8
1,706,604 - +0.5
1,706,799 - HP15_1611 0.13 -0.2
1,707,033 + HP15_1611 0.48 -0.1
1,707,053 - HP15_1611 0.51 +0.5
1,707,053 - HP15_1611 0.51 -0.5

Or see this region's nucleotide sequence