Experiment: Pyruvate-Sulfite (60-20 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2419 and DVU2420 are separated by 289 nucleotides DVU2420 and dmpI are separated by 133 nucleotides dmpI and DVU2422 are separated by 2 nucleotides DVU2422 and DVU2423 are separated by 101 nucleotides
DVU2419: DVU2419 - conserved domain protein (TIGR), at 2,526,617 to 2,527,171
DVU2419
DVU2420: DVU2420 - conserved hypothetical protein (TIGR), at 2,527,461 to 2,527,790
DVU2420
DVU2421: dmpI - 4-oxalocrotonate tautomerase family protein (TIGR), at 2,527,924 to 2,528,121
dmpI
DVU2422: DVU2422 - nitroreductase family protein (TIGR), at 2,528,124 to 2,528,633
DVU2422
DVU2423: DVU2423 - transcriptional regulator, putative (TIGR), at 2,528,735 to 2,529,214
DVU2423
Position (kb)
2527
2528
2529 Strain fitness (log2 ratio)
-2
-1
0
1 at 2526.960 kb on - strand, within DVU2419 at 2526.977 kb on - strand, within DVU2419 at 2527.194 kb on + strand at 2527.227 kb on + strand at 2527.254 kb on - strand at 2527.254 kb on - strand at 2527.307 kb on + strand at 2527.320 kb on - strand at 2527.343 kb on - strand at 2527.346 kb on + strand at 2527.354 kb on - strand at 2527.492 kb on - strand at 2527.593 kb on + strand, within DVU2420 at 2527.650 kb on - strand, within DVU2420 at 2527.650 kb on - strand, within DVU2420 at 2527.690 kb on + strand, within DVU2420 at 2527.761 kb on - strand at 2527.799 kb on + strand at 2527.953 kb on + strand, within dmpI at 2527.968 kb on + strand, within dmpI at 2527.970 kb on + strand, within dmpI at 2527.978 kb on - strand, within dmpI at 2527.980 kb on + strand, within dmpI at 2528.037 kb on + strand, within dmpI at 2528.072 kb on + strand, within dmpI at 2528.151 kb on - strand at 2528.247 kb on + strand, within DVU2422 at 2528.303 kb on + strand, within DVU2422 at 2528.311 kb on - strand, within DVU2422 at 2528.311 kb on - strand, within DVU2422 at 2528.395 kb on + strand, within DVU2422 at 2528.398 kb on - strand, within DVU2422 at 2528.403 kb on - strand, within DVU2422 at 2528.478 kb on + strand, within DVU2422 at 2528.478 kb on + strand, within DVU2422 at 2528.505 kb on - strand, within DVU2422 at 2528.523 kb on + strand, within DVU2422 at 2528.639 kb on + strand at 2528.669 kb on + strand at 2528.801 kb on + strand, within DVU2423 at 2528.881 kb on + strand, within DVU2423 at 2528.884 kb on - strand, within DVU2423 at 2528.935 kb on + strand, within DVU2423 at 2528.946 kb on + strand, within DVU2423 at 2528.948 kb on + strand, within DVU2423 at 2529.098 kb on - strand, within DVU2423 at 2529.106 kb on - strand, within DVU2423
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20 mM) minimal remove 2,526,960 - DVU2419 0.62 +0.1 2,526,977 - DVU2419 0.65 +0.3 2,527,194 + +0.9 2,527,227 + +0.7 2,527,254 - +0.9 2,527,254 - -0.3 2,527,307 + -2.3 2,527,320 - -0.1 2,527,343 - -0.0 2,527,346 + -0.0 2,527,354 - -0.4 2,527,492 - -2.4 2,527,593 + DVU2420 0.40 +0.1 2,527,650 - DVU2420 0.57 -0.1 2,527,650 - DVU2420 0.57 +0.1 2,527,690 + DVU2420 0.69 -0.3 2,527,761 - +0.7 2,527,799 + -0.3 2,527,953 + dmpI DVU2421 0.15 +0.8 2,527,968 + dmpI DVU2421 0.22 -1.0 2,527,970 + dmpI DVU2421 0.23 +1.4 2,527,978 - dmpI DVU2421 0.27 -0.1 2,527,980 + dmpI DVU2421 0.28 -1.1 2,528,037 + dmpI DVU2421 0.57 -0.2 2,528,072 + dmpI DVU2421 0.75 -0.1 2,528,151 - +0.4 2,528,247 + DVU2422 0.24 -0.4 2,528,303 + DVU2422 0.35 -1.4 2,528,311 - DVU2422 0.37 +0.1 2,528,311 - DVU2422 0.37 -0.3 2,528,395 + DVU2422 0.53 +0.2 2,528,398 - DVU2422 0.54 -1.0 2,528,403 - DVU2422 0.55 -0.7 2,528,478 + DVU2422 0.69 -0.4 2,528,478 + DVU2422 0.69 +0.3 2,528,505 - DVU2422 0.75 -0.3 2,528,523 + DVU2422 0.78 -0.2 2,528,639 + +0.3 2,528,669 + +0.6 2,528,801 + DVU2423 0.14 -0.2 2,528,881 + DVU2423 0.30 +0.5 2,528,884 - DVU2423 0.31 -0.4 2,528,935 + DVU2423 0.42 +0.1 2,528,946 + DVU2423 0.44 +0.1 2,528,948 + DVU2423 0.44 -0.1 2,529,098 - DVU2423 0.76 +0.6 2,529,106 - DVU2423 0.77 -0.0
Or see this region's nucleotide sequence