Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.698.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.696.1 and Xcc-8004.698.1 are separated by 181 nucleotidesXcc-8004.698.1 and Xcc-8004.699.1 are separated by 71 nucleotides Xcc-8004.696.1: Xcc-8004.696.1 - FIG01212883: hypothetical protein, at 645,260 to 647,416 Xcc-8004.696.1 Xcc-8004.698.1: Xcc-8004.698.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 647,598 to 650,552 Xcc-8004.698.1 Xcc-8004.699.1: Xcc-8004.699.1 - hypothetical protein, at 650,624 to 651,982 Xcc-8004.699.1 Position (kb) 647 648 649 650 651Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 646.672 kb on + strand, within Xcc-8004.696.1at 646.673 kb on - strand, within Xcc-8004.696.1at 646.673 kb on - strand, within Xcc-8004.696.1at 646.694 kb on + strand, within Xcc-8004.696.1at 646.694 kb on + strand, within Xcc-8004.696.1at 646.745 kb on + strand, within Xcc-8004.696.1at 646.745 kb on + strand, within Xcc-8004.696.1at 646.746 kb on - strand, within Xcc-8004.696.1at 646.746 kb on - strand, within Xcc-8004.696.1at 646.746 kb on - strand, within Xcc-8004.696.1at 646.746 kb on - strand, within Xcc-8004.696.1at 646.746 kb on - strand, within Xcc-8004.696.1at 646.774 kb on + strand, within Xcc-8004.696.1at 646.775 kb on - strand, within Xcc-8004.696.1at 646.775 kb on - strand, within Xcc-8004.696.1at 646.801 kb on + strand, within Xcc-8004.696.1at 646.801 kb on + strand, within Xcc-8004.696.1at 646.840 kb on + strand, within Xcc-8004.696.1at 646.840 kb on + strand, within Xcc-8004.696.1at 646.841 kb on - strand, within Xcc-8004.696.1at 646.841 kb on - strand, within Xcc-8004.696.1at 646.841 kb on - strand, within Xcc-8004.696.1at 646.841 kb on - strand, within Xcc-8004.696.1at 646.841 kb on - strand, within Xcc-8004.696.1at 646.979 kb on + strand, within Xcc-8004.696.1at 647.039 kb on - strand, within Xcc-8004.696.1at 647.121 kb on + strand, within Xcc-8004.696.1at 647.121 kb on + strand, within Xcc-8004.696.1at 647.121 kb on + strand, within Xcc-8004.696.1at 647.122 kb on - strand, within Xcc-8004.696.1at 647.122 kb on - strand, within Xcc-8004.696.1at 647.122 kb on - strand, within Xcc-8004.696.1at 647.122 kb on - strand, within Xcc-8004.696.1at 647.122 kb on - strand, within Xcc-8004.696.1at 647.156 kb on - strand, within Xcc-8004.696.1at 647.238 kb on + strandat 647.238 kb on + strandat 647.287 kb on + strandat 647.287 kb on + strandat 647.287 kb on + strandat 647.287 kb on + strandat 647.320 kb on - strandat 647.320 kb on - strandat 647.320 kb on - strandat 647.388 kb on + strandat 647.388 kb on + strandat 647.388 kb on + strandat 647.388 kb on + strandat 647.389 kb on - strandat 647.389 kb on - strandat 647.492 kb on - strandat 647.492 kb on - strandat 647.532 kb on - strandat 647.532 kb on - strandat 647.532 kb on - strandat 647.532 kb on - strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.666 kb on + strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.667 kb on - strandat 647.902 kb on - strand, within Xcc-8004.698.1at 647.902 kb on - strand, within Xcc-8004.698.1at 647.966 kb on + strand, within Xcc-8004.698.1at 647.966 kb on + strand, within Xcc-8004.698.1at 647.966 kb on + strand, within Xcc-8004.698.1at 647.966 kb on + strand, within Xcc-8004.698.1at 647.966 kb on + strand, within Xcc-8004.698.1at 647.966 kb on + strand, within Xcc-8004.698.1at 647.967 kb on - strand, within Xcc-8004.698.1at 648.051 kb on + strand, within Xcc-8004.698.1at 648.090 kb on + strand, within Xcc-8004.698.1at 648.091 kb on - strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.098 kb on + strand, within Xcc-8004.698.1at 648.099 kb on - strand, within Xcc-8004.698.1at 648.099 kb on - strand, within Xcc-8004.698.1at 648.099 kb on - strand, within Xcc-8004.698.1at 648.099 kb on - strand, within Xcc-8004.698.1at 648.156 kb on + strand, within Xcc-8004.698.1at 648.156 kb on + strand, within Xcc-8004.698.1at 648.156 kb on + strand, within Xcc-8004.698.1at 648.156 kb on + strand, within Xcc-8004.698.1at 648.156 kb on + strand, within Xcc-8004.698.1at 648.157 kb on - strand, within Xcc-8004.698.1at 648.157 kb on - strand, within Xcc-8004.698.1at 648.157 kb on - strand, within Xcc-8004.698.1at 648.157 kb on - strand, within Xcc-8004.698.1at 648.157 kb on - strand, within Xcc-8004.698.1at 648.157 kb on - strand, within Xcc-8004.698.1at 648.207 kb on + strand, within Xcc-8004.698.1at 648.208 kb on - strand, within Xcc-8004.698.1at 648.318 kb on + strand, within Xcc-8004.698.1at 648.319 kb on - strand, within Xcc-8004.698.1at 648.396 kb on + strand, within Xcc-8004.698.1at 648.396 kb on + strand, within Xcc-8004.698.1at 648.426 kb on + strand, within Xcc-8004.698.1at 648.426 kb on + strand, within Xcc-8004.698.1at 648.426 kb on + strand, within Xcc-8004.698.1at 648.549 kb on + strand, within Xcc-8004.698.1at 648.549 kb on + strand, within Xcc-8004.698.1at 648.550 kb on - strand, within Xcc-8004.698.1at 648.588 kb on + strand, within Xcc-8004.698.1at 648.589 kb on - strand, within Xcc-8004.698.1at 648.589 kb on - strand, within Xcc-8004.698.1at 648.589 kb on - strand, within Xcc-8004.698.1at 648.609 kb on + strand, within Xcc-8004.698.1at 648.654 kb on + strand, within Xcc-8004.698.1at 648.655 kb on - strand, within Xcc-8004.698.1at 648.655 kb on - strand, within Xcc-8004.698.1at 648.660 kb on + strand, within Xcc-8004.698.1at 648.661 kb on - strand, within Xcc-8004.698.1at 648.738 kb on + strand, within Xcc-8004.698.1at 648.738 kb on + strand, within Xcc-8004.698.1at 648.738 kb on + strand, within Xcc-8004.698.1at 648.738 kb on + strand, within Xcc-8004.698.1at 648.738 kb on + strand, within Xcc-8004.698.1at 648.739 kb on - strand, within Xcc-8004.698.1at 648.739 kb on - strand, within Xcc-8004.698.1at 648.750 kb on + strand, within Xcc-8004.698.1at 648.756 kb on + strand, within Xcc-8004.698.1at 648.757 kb on - strand, within Xcc-8004.698.1at 648.798 kb on + strand, within Xcc-8004.698.1at 648.798 kb on + strand, within Xcc-8004.698.1at 648.799 kb on - strand, within Xcc-8004.698.1at 648.855 kb on + strand, within Xcc-8004.698.1at 648.855 kb on + strand, within Xcc-8004.698.1at 648.855 kb on + strand, within Xcc-8004.698.1at 648.856 kb on - strand, within Xcc-8004.698.1at 648.856 kb on - strand, within Xcc-8004.698.1at 648.949 kb on - strand, within Xcc-8004.698.1at 648.949 kb on - strand, within Xcc-8004.698.1at 648.963 kb on + strand, within Xcc-8004.698.1at 648.963 kb on + strand, within Xcc-8004.698.1at 648.963 kb on + strand, within Xcc-8004.698.1at 648.964 kb on - strand, within Xcc-8004.698.1at 648.964 kb on - strand, within Xcc-8004.698.1at 648.964 kb on - strand, within Xcc-8004.698.1at 648.964 kb on - strand, within Xcc-8004.698.1at 648.964 kb on - strand, within Xcc-8004.698.1at 649.047 kb on + strand, within Xcc-8004.698.1at 649.047 kb on + strand, within Xcc-8004.698.1at 649.048 kb on - strand, within Xcc-8004.698.1at 649.048 kb on - strand, within Xcc-8004.698.1at 649.048 kb on - strand, within Xcc-8004.698.1at 649.048 kb on - strand, within Xcc-8004.698.1at 649.096 kb on - strand, within Xcc-8004.698.1at 649.132 kb on - strand, within Xcc-8004.698.1at 649.236 kb on + strand, within Xcc-8004.698.1at 649.361 kb on - strand, within Xcc-8004.698.1at 649.383 kb on + strand, within Xcc-8004.698.1at 649.402 kb on - strand, within Xcc-8004.698.1at 649.402 kb on - strand, within Xcc-8004.698.1at 649.539 kb on + strand, within Xcc-8004.698.1at 649.539 kb on + strand, within Xcc-8004.698.1at 649.540 kb on - strand, within Xcc-8004.698.1at 649.540 kb on - strand, within Xcc-8004.698.1at 649.540 kb on - strand, within Xcc-8004.698.1at 649.540 kb on - strand, within Xcc-8004.698.1at 649.540 kb on - strand, within Xcc-8004.698.1at 649.650 kb on + strand, within Xcc-8004.698.1at 649.653 kb on + strand, within Xcc-8004.698.1at 649.666 kb on + strand, within Xcc-8004.698.1at 649.767 kb on + strand, within Xcc-8004.698.1at 650.064 kb on + strand, within Xcc-8004.698.1at 650.098 kb on - strand, within Xcc-8004.698.1at 650.199 kb on + strand, within Xcc-8004.698.1at 650.200 kb on - strand, within Xcc-8004.698.1at 650.368 kb on - strandat 650.451 kb on + strandat 650.472 kb on + strandat 650.472 kb on + strandat 650.472 kb on + strandat 650.473 kb on - strandat 650.487 kb on + strandat 650.488 kb on - strandat 650.543 kb on + strandat 650.544 kb on - strandat 650.856 kb on + strand, within Xcc-8004.699.1at 650.894 kb on + strand, within Xcc-8004.699.1at 651.008 kb on + strand, within Xcc-8004.699.1at 651.158 kb on + strand, within Xcc-8004.699.1at 651.158 kb on + strand, within Xcc-8004.699.1at 651.158 kb on + strand, within Xcc-8004.699.1at 651.158 kb on + strand, within Xcc-8004.699.1at 651.295 kb on - strand, within Xcc-8004.699.1at 651.396 kb on + strand, within Xcc-8004.699.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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646,672 + Xcc-8004.696.1 0.65 -1.3
646,673 - Xcc-8004.696.1 0.66 +0.8
646,673 - Xcc-8004.696.1 0.66 -0.3
646,694 + Xcc-8004.696.1 0.66 +0.4
646,694 + Xcc-8004.696.1 0.66 -1.7
646,745 + Xcc-8004.696.1 0.69 +0.1
646,745 + Xcc-8004.696.1 0.69 -0.9
646,746 - Xcc-8004.696.1 0.69 +0.2
646,746 - Xcc-8004.696.1 0.69 -0.4
646,746 - Xcc-8004.696.1 0.69 -0.4
646,746 - Xcc-8004.696.1 0.69 +0.3
646,746 - Xcc-8004.696.1 0.69 -0.0
646,774 + Xcc-8004.696.1 0.70 +0.7
646,775 - Xcc-8004.696.1 0.70 -1.1
646,775 - Xcc-8004.696.1 0.70 +0.1
646,801 + Xcc-8004.696.1 0.71 +1.4
646,801 + Xcc-8004.696.1 0.71 +0.3
646,840 + Xcc-8004.696.1 0.73 +0.5
646,840 + Xcc-8004.696.1 0.73 -0.4
646,841 - Xcc-8004.696.1 0.73 +0.3
646,841 - Xcc-8004.696.1 0.73 -0.8
646,841 - Xcc-8004.696.1 0.73 +0.5
646,841 - Xcc-8004.696.1 0.73 -0.1
646,841 - Xcc-8004.696.1 0.73 +0.2
646,979 + Xcc-8004.696.1 0.80 +0.7
647,039 - Xcc-8004.696.1 0.82 +0.0
647,121 + Xcc-8004.696.1 0.86 -1.1
647,121 + Xcc-8004.696.1 0.86 -0.3
647,121 + Xcc-8004.696.1 0.86 -0.8
647,122 - Xcc-8004.696.1 0.86 +0.4
647,122 - Xcc-8004.696.1 0.86 +1.6
647,122 - Xcc-8004.696.1 0.86 -0.7
647,122 - Xcc-8004.696.1 0.86 +1.1
647,122 - Xcc-8004.696.1 0.86 +0.4
647,156 - Xcc-8004.696.1 0.88 +0.4
647,238 + +1.9
647,238 + -0.7
647,287 + +1.5
647,287 + -0.9
647,287 + -0.0
647,287 + +0.1
647,320 - +1.0
647,320 - +1.0
647,320 - +2.3
647,388 + -1.8
647,388 + +1.9
647,388 + -0.4
647,388 + -1.9
647,389 - -0.1
647,389 - -0.3
647,492 - +0.2
647,492 - +0.5
647,532 - -1.0
647,532 - +0.7
647,532 - -0.4
647,532 - +2.2
647,666 + +0.7
647,666 + -1.4
647,666 + +0.6
647,666 + +1.3
647,666 + +0.4
647,666 + +0.9
647,666 + -2.7
647,666 + +1.2
647,666 + +1.3
647,666 + -0.6
647,667 - +1.3
647,667 - +0.7
647,667 - -1.7
647,667 - -0.3
647,667 - -0.2
647,667 - +4.0
647,667 - +0.6
647,667 - -0.6
647,667 - +0.1
647,667 - +0.3
647,667 - -0.5
647,902 - Xcc-8004.698.1 0.10 +1.2
647,902 - Xcc-8004.698.1 0.10 +1.5
647,966 + Xcc-8004.698.1 0.12 -2.4
647,966 + Xcc-8004.698.1 0.12 -0.1
647,966 + Xcc-8004.698.1 0.12 +0.1
647,966 + Xcc-8004.698.1 0.12 +1.4
647,966 + Xcc-8004.698.1 0.12 +0.8
647,966 + Xcc-8004.698.1 0.12 +0.9
647,967 - Xcc-8004.698.1 0.12 +0.6
648,051 + Xcc-8004.698.1 0.15 +1.0
648,090 + Xcc-8004.698.1 0.17 -0.3
648,091 - Xcc-8004.698.1 0.17 +0.7
648,098 + Xcc-8004.698.1 0.17 +2.9
648,098 + Xcc-8004.698.1 0.17 -0.1
648,098 + Xcc-8004.698.1 0.17 -0.7
648,098 + Xcc-8004.698.1 0.17 -1.3
648,098 + Xcc-8004.698.1 0.17 +0.7
648,098 + Xcc-8004.698.1 0.17 -1.3
648,098 + Xcc-8004.698.1 0.17 +0.4
648,099 - Xcc-8004.698.1 0.17 +1.0
648,099 - Xcc-8004.698.1 0.17 +0.6
648,099 - Xcc-8004.698.1 0.17 -1.5
648,099 - Xcc-8004.698.1 0.17 +0.5
648,156 + Xcc-8004.698.1 0.19 -1.2
648,156 + Xcc-8004.698.1 0.19 +1.1
648,156 + Xcc-8004.698.1 0.19 +0.4
648,156 + Xcc-8004.698.1 0.19 -3.0
648,156 + Xcc-8004.698.1 0.19 +0.5
648,157 - Xcc-8004.698.1 0.19 -0.6
648,157 - Xcc-8004.698.1 0.19 +1.2
648,157 - Xcc-8004.698.1 0.19 -0.4
648,157 - Xcc-8004.698.1 0.19 +0.7
648,157 - Xcc-8004.698.1 0.19 +0.3
648,157 - Xcc-8004.698.1 0.19 -0.7
648,207 + Xcc-8004.698.1 0.21 -0.0
648,208 - Xcc-8004.698.1 0.21 -0.3
648,318 + Xcc-8004.698.1 0.24 -1.0
648,319 - Xcc-8004.698.1 0.24 -0.4
648,396 + Xcc-8004.698.1 0.27 -0.4
648,396 + Xcc-8004.698.1 0.27 -0.1
648,426 + Xcc-8004.698.1 0.28 -1.0
648,426 + Xcc-8004.698.1 0.28 -0.5
648,426 + Xcc-8004.698.1 0.28 -0.7
648,549 + Xcc-8004.698.1 0.32 +0.4
648,549 + Xcc-8004.698.1 0.32 -0.2
648,550 - Xcc-8004.698.1 0.32 -0.8
648,588 + Xcc-8004.698.1 0.34 +0.7
648,589 - Xcc-8004.698.1 0.34 +0.4
648,589 - Xcc-8004.698.1 0.34 -0.1
648,589 - Xcc-8004.698.1 0.34 -0.0
648,609 + Xcc-8004.698.1 0.34 -0.5
648,654 + Xcc-8004.698.1 0.36 -0.4
648,655 - Xcc-8004.698.1 0.36 -1.1
648,655 - Xcc-8004.698.1 0.36 -0.5
648,660 + Xcc-8004.698.1 0.36 +1.2
648,661 - Xcc-8004.698.1 0.36 +0.6
648,738 + Xcc-8004.698.1 0.39 -0.9
648,738 + Xcc-8004.698.1 0.39 -1.1
648,738 + Xcc-8004.698.1 0.39 +1.1
648,738 + Xcc-8004.698.1 0.39 -0.5
648,738 + Xcc-8004.698.1 0.39 -2.2
648,739 - Xcc-8004.698.1 0.39 +2.1
648,739 - Xcc-8004.698.1 0.39 -1.3
648,750 + Xcc-8004.698.1 0.39 -2.0
648,756 + Xcc-8004.698.1 0.39 -2.5
648,757 - Xcc-8004.698.1 0.39 -0.4
648,798 + Xcc-8004.698.1 0.41 -0.2
648,798 + Xcc-8004.698.1 0.41 +1.2
648,799 - Xcc-8004.698.1 0.41 +1.3
648,855 + Xcc-8004.698.1 0.43 -0.7
648,855 + Xcc-8004.698.1 0.43 +0.3
648,855 + Xcc-8004.698.1 0.43 +0.4
648,856 - Xcc-8004.698.1 0.43 -0.2
648,856 - Xcc-8004.698.1 0.43 -0.5
648,949 - Xcc-8004.698.1 0.46 +0.0
648,949 - Xcc-8004.698.1 0.46 -0.1
648,963 + Xcc-8004.698.1 0.46 +0.8
648,963 + Xcc-8004.698.1 0.46 +2.8
648,963 + Xcc-8004.698.1 0.46 -0.2
648,964 - Xcc-8004.698.1 0.46 +1.0
648,964 - Xcc-8004.698.1 0.46 -1.2
648,964 - Xcc-8004.698.1 0.46 +1.5
648,964 - Xcc-8004.698.1 0.46 -1.2
648,964 - Xcc-8004.698.1 0.46 -0.2
649,047 + Xcc-8004.698.1 0.49 +0.6
649,047 + Xcc-8004.698.1 0.49 -0.3
649,048 - Xcc-8004.698.1 0.49 +0.0
649,048 - Xcc-8004.698.1 0.49 +0.1
649,048 - Xcc-8004.698.1 0.49 +0.5
649,048 - Xcc-8004.698.1 0.49 -0.1
649,096 - Xcc-8004.698.1 0.51 -1.8
649,132 - Xcc-8004.698.1 0.52 +0.6
649,236 + Xcc-8004.698.1 0.55 -0.1
649,361 - Xcc-8004.698.1 0.60 -0.8
649,383 + Xcc-8004.698.1 0.60 -1.0
649,402 - Xcc-8004.698.1 0.61 -0.1
649,402 - Xcc-8004.698.1 0.61 +0.2
649,539 + Xcc-8004.698.1 0.66 -0.4
649,539 + Xcc-8004.698.1 0.66 +1.6
649,540 - Xcc-8004.698.1 0.66 -0.7
649,540 - Xcc-8004.698.1 0.66 -1.7
649,540 - Xcc-8004.698.1 0.66 +0.2
649,540 - Xcc-8004.698.1 0.66 +0.2
649,540 - Xcc-8004.698.1 0.66 -0.2
649,650 + Xcc-8004.698.1 0.69 +0.1
649,653 + Xcc-8004.698.1 0.70 -0.1
649,666 + Xcc-8004.698.1 0.70 -2.0
649,767 + Xcc-8004.698.1 0.73 -1.9
650,064 + Xcc-8004.698.1 0.83 +0.6
650,098 - Xcc-8004.698.1 0.85 -0.1
650,199 + Xcc-8004.698.1 0.88 +0.4
650,200 - Xcc-8004.698.1 0.88 +0.1
650,368 - +0.4
650,451 + -0.5
650,472 + -0.2
650,472 + +0.4
650,472 + -0.7
650,473 - -1.5
650,487 + -0.7
650,488 - +0.1
650,543 + +0.0
650,544 - -2.7
650,856 + Xcc-8004.699.1 0.17 +0.2
650,894 + Xcc-8004.699.1 0.20 -0.0
651,008 + Xcc-8004.699.1 0.28 +1.3
651,158 + Xcc-8004.699.1 0.39 +1.0
651,158 + Xcc-8004.699.1 0.39 +0.5
651,158 + Xcc-8004.699.1 0.39 +0.0
651,158 + Xcc-8004.699.1 0.39 -2.0
651,295 - Xcc-8004.699.1 0.49 -0.6
651,396 + Xcc-8004.699.1 0.57 +0.8

Or see this region's nucleotide sequence