Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.381.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.380.1 and Xcc-8004.381.1 overlap by 4 nucleotidesXcc-8004.381.1 and Xcc-8004.382.1 are separated by 61 nucleotides Xcc-8004.380.1: Xcc-8004.380.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 364,258 to 365,238 Xcc-8004.380.1 Xcc-8004.381.1: Xcc-8004.381.1 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 365,235 to 366,287 Xcc-8004.381.1 Xcc-8004.382.1: Xcc-8004.382.1 - Transcriptional regulator, LysR family, at 366,349 to 367,332 Xcc-8004.382.1 Position (kb) 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 364.652 kb on + strand, within Xcc-8004.380.1at 364.652 kb on + strand, within Xcc-8004.380.1at 364.652 kb on + strand, within Xcc-8004.380.1at 364.652 kb on + strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.653 kb on - strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.805 kb on + strand, within Xcc-8004.380.1at 364.806 kb on - strand, within Xcc-8004.380.1at 364.806 kb on - strand, within Xcc-8004.380.1at 364.808 kb on + strand, within Xcc-8004.380.1at 364.808 kb on + strand, within Xcc-8004.380.1at 364.808 kb on + strand, within Xcc-8004.380.1at 364.809 kb on - strand, within Xcc-8004.380.1at 364.809 kb on - strand, within Xcc-8004.380.1at 364.809 kb on - strand, within Xcc-8004.380.1at 364.809 kb on - strand, within Xcc-8004.380.1at 364.809 kb on - strand, within Xcc-8004.380.1at 365.030 kb on + strand, within Xcc-8004.380.1at 365.030 kb on + strand, within Xcc-8004.380.1at 365.030 kb on + strand, within Xcc-8004.380.1at 365.030 kb on + strand, within Xcc-8004.380.1at 365.030 kb on + strand, within Xcc-8004.380.1at 365.031 kb on - strand, within Xcc-8004.380.1at 365.255 kb on + strandat 365.257 kb on + strandat 365.258 kb on - strandat 365.258 kb on - strandat 365.258 kb on - strandat 365.344 kb on + strand, within Xcc-8004.381.1at 365.344 kb on + strand, within Xcc-8004.381.1at 365.345 kb on - strand, within Xcc-8004.381.1at 365.629 kb on + strand, within Xcc-8004.381.1at 365.629 kb on + strand, within Xcc-8004.381.1at 365.629 kb on + strand, within Xcc-8004.381.1at 365.629 kb on + strand, within Xcc-8004.381.1at 365.630 kb on - strand, within Xcc-8004.381.1at 365.650 kb on + strand, within Xcc-8004.381.1at 365.650 kb on + strand, within Xcc-8004.381.1at 365.651 kb on - strand, within Xcc-8004.381.1at 365.689 kb on + strand, within Xcc-8004.381.1at 365.689 kb on + strand, within Xcc-8004.381.1at 365.689 kb on + strand, within Xcc-8004.381.1at 365.689 kb on + strand, within Xcc-8004.381.1at 365.689 kb on + strand, within Xcc-8004.381.1at 365.689 kb on + strand, within Xcc-8004.381.1at 365.690 kb on - strand, within Xcc-8004.381.1at 365.938 kb on + strand, within Xcc-8004.381.1at 365.938 kb on + strand, within Xcc-8004.381.1at 365.938 kb on + strand, within Xcc-8004.381.1at 365.938 kb on + strand, within Xcc-8004.381.1at 365.938 kb on + strand, within Xcc-8004.381.1at 365.938 kb on + strand, within Xcc-8004.381.1at 365.939 kb on - strand, within Xcc-8004.381.1at 365.939 kb on - strand, within Xcc-8004.381.1at 365.939 kb on - strand, within Xcc-8004.381.1at 365.939 kb on - strand, within Xcc-8004.381.1at 365.939 kb on - strand, within Xcc-8004.381.1at 366.031 kb on + strand, within Xcc-8004.381.1at 366.305 kb on - strandat 366.332 kb on + strandat 366.332 kb on + strandat 366.332 kb on + strandat 366.333 kb on - strandat 366.333 kb on - strandat 366.333 kb on - strandat 366.333 kb on - strandat 366.333 kb on - strandat 366.333 kb on - strandat 366.443 kb on - strandat 366.443 kb on - strandat 366.643 kb on + strand, within Xcc-8004.382.1at 366.643 kb on + strand, within Xcc-8004.382.1at 366.643 kb on + strand, within Xcc-8004.382.1at 366.643 kb on + strand, within Xcc-8004.382.1at 366.644 kb on - strand, within Xcc-8004.382.1at 366.644 kb on - strand, within Xcc-8004.382.1at 366.644 kb on - strand, within Xcc-8004.382.1at 366.644 kb on - strand, within Xcc-8004.382.1at 366.769 kb on + strand, within Xcc-8004.382.1at 367.042 kb on + strand, within Xcc-8004.382.1at 367.091 kb on + strand, within Xcc-8004.382.1at 367.091 kb on + strand, within Xcc-8004.382.1at 367.091 kb on + strand, within Xcc-8004.382.1at 367.091 kb on + strand, within Xcc-8004.382.1at 367.091 kb on + strand, within Xcc-8004.382.1at 367.092 kb on - strand, within Xcc-8004.382.1at 367.092 kb on - strand, within Xcc-8004.382.1at 367.092 kb on - strand, within Xcc-8004.382.1at 367.092 kb on - strand, within Xcc-8004.382.1at 367.092 kb on - strand, within Xcc-8004.382.1at 367.092 kb on - strand, within Xcc-8004.382.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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364,652 + Xcc-8004.380.1 0.40 -1.2
364,652 + Xcc-8004.380.1 0.40 +1.2
364,652 + Xcc-8004.380.1 0.40 +0.6
364,652 + Xcc-8004.380.1 0.40 +0.8
364,653 - Xcc-8004.380.1 0.40 +0.9
364,653 - Xcc-8004.380.1 0.40 -0.3
364,653 - Xcc-8004.380.1 0.40 +0.4
364,653 - Xcc-8004.380.1 0.40 +0.5
364,805 + Xcc-8004.380.1 0.56 -1.1
364,805 + Xcc-8004.380.1 0.56 +2.4
364,805 + Xcc-8004.380.1 0.56 +0.5
364,805 + Xcc-8004.380.1 0.56 +0.3
364,805 + Xcc-8004.380.1 0.56 +1.0
364,806 - Xcc-8004.380.1 0.56 +1.4
364,806 - Xcc-8004.380.1 0.56 +1.0
364,808 + Xcc-8004.380.1 0.56 +0.4
364,808 + Xcc-8004.380.1 0.56 -0.1
364,808 + Xcc-8004.380.1 0.56 -0.1
364,809 - Xcc-8004.380.1 0.56 +0.4
364,809 - Xcc-8004.380.1 0.56 -0.9
364,809 - Xcc-8004.380.1 0.56 -1.7
364,809 - Xcc-8004.380.1 0.56 +1.9
364,809 - Xcc-8004.380.1 0.56 -1.6
365,030 + Xcc-8004.380.1 0.79 -0.8
365,030 + Xcc-8004.380.1 0.79 -0.1
365,030 + Xcc-8004.380.1 0.79 -1.7
365,030 + Xcc-8004.380.1 0.79 -1.0
365,030 + Xcc-8004.380.1 0.79 -0.3
365,031 - Xcc-8004.380.1 0.79 -2.0
365,255 + -1.7
365,257 + -0.3
365,258 - -1.6
365,258 - +0.5
365,258 - +0.6
365,344 + Xcc-8004.381.1 0.10 +0.9
365,344 + Xcc-8004.381.1 0.10 +0.4
365,345 - Xcc-8004.381.1 0.10 +2.0
365,629 + Xcc-8004.381.1 0.37 -3.4
365,629 + Xcc-8004.381.1 0.37 -1.1
365,629 + Xcc-8004.381.1 0.37 -0.9
365,629 + Xcc-8004.381.1 0.37 +0.8
365,630 - Xcc-8004.381.1 0.38 -2.2
365,650 + Xcc-8004.381.1 0.39 -1.1
365,650 + Xcc-8004.381.1 0.39 -0.6
365,651 - Xcc-8004.381.1 0.40 -0.6
365,689 + Xcc-8004.381.1 0.43 -1.7
365,689 + Xcc-8004.381.1 0.43 -0.0
365,689 + Xcc-8004.381.1 0.43 -1.7
365,689 + Xcc-8004.381.1 0.43 -0.3
365,689 + Xcc-8004.381.1 0.43 -0.9
365,689 + Xcc-8004.381.1 0.43 -1.1
365,690 - Xcc-8004.381.1 0.43 +1.2
365,938 + Xcc-8004.381.1 0.67 -0.2
365,938 + Xcc-8004.381.1 0.67 -1.9
365,938 + Xcc-8004.381.1 0.67 -1.5
365,938 + Xcc-8004.381.1 0.67 +0.6
365,938 + Xcc-8004.381.1 0.67 +1.3
365,938 + Xcc-8004.381.1 0.67 -2.2
365,939 - Xcc-8004.381.1 0.67 +0.7
365,939 - Xcc-8004.381.1 0.67 +0.5
365,939 - Xcc-8004.381.1 0.67 +1.6
365,939 - Xcc-8004.381.1 0.67 -0.1
365,939 - Xcc-8004.381.1 0.67 +1.0
366,031 + Xcc-8004.381.1 0.76 -0.3
366,305 - +1.2
366,332 + +0.7
366,332 + +0.2
366,332 + -0.1
366,333 - +0.2
366,333 - -1.6
366,333 - +1.1
366,333 - +0.4
366,333 - +1.9
366,333 - -1.6
366,443 - +0.9
366,443 - -1.0
366,643 + Xcc-8004.382.1 0.30 -2.1
366,643 + Xcc-8004.382.1 0.30 -1.5
366,643 + Xcc-8004.382.1 0.30 +0.9
366,643 + Xcc-8004.382.1 0.30 +1.1
366,644 - Xcc-8004.382.1 0.30 +0.4
366,644 - Xcc-8004.382.1 0.30 +0.7
366,644 - Xcc-8004.382.1 0.30 +0.5
366,644 - Xcc-8004.382.1 0.30 -1.2
366,769 + Xcc-8004.382.1 0.43 -0.4
367,042 + Xcc-8004.382.1 0.70 -1.5
367,091 + Xcc-8004.382.1 0.75 +0.6
367,091 + Xcc-8004.382.1 0.75 -1.3
367,091 + Xcc-8004.382.1 0.75 +0.3
367,091 + Xcc-8004.382.1 0.75 +0.0
367,091 + Xcc-8004.382.1 0.75 -1.6
367,092 - Xcc-8004.382.1 0.76 -1.7
367,092 - Xcc-8004.382.1 0.76 -1.2
367,092 - Xcc-8004.382.1 0.76 +2.1
367,092 - Xcc-8004.382.1 0.76 -0.3
367,092 - Xcc-8004.382.1 0.76 -0.6
367,092 - Xcc-8004.382.1 0.76 -0.1

Or see this region's nucleotide sequence