Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3138.1 and Xcc-8004.3139.1 are separated by 5 nucleotides Xcc-8004.3139.1 and Xcc-8004.3140.1 overlap by 4 nucleotides Xcc-8004.3140.1 and Xcc-8004.3141.1 are separated by 3 nucleotides
Xcc-8004.3138.1: Xcc-8004.3138.1 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 3,059,389 to 3,059,880
Xcc-8004.3138.1
Xcc-8004.3139.1: Xcc-8004.3139.1 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,059,886 to 3,060,683
Xcc-8004.3139.1
Xcc-8004.3140.1: Xcc-8004.3140.1 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,060,680 to 3,061,045
Xcc-8004.3140.1
Xcc-8004.3141.1: Xcc-8004.3141.1 - Enolase (EC 4.2.1.11), at 3,061,049 to 3,062,341
Xcc-8004.3141.1
Position (kb)
3060
3061
3062 Strain fitness (log2 ratio)
-2
-1
0
1 at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.955 kb on - strand at 3060.693 kb on - strand at 3060.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,059,888 - -2.1 3,059,888 - +1.0 3,059,888 - +0.5 3,059,888 - -1.5 3,059,888 - +0.7 3,059,888 - +0.4 3,059,888 - +1.2 3,059,888 - -2.1 3,059,888 - -1.9 3,059,888 - +1.3 3,059,888 - -0.5 3,059,888 - +0.6 3,059,955 - -1.1 3,060,693 - +1.5 3,060,693 - -0.6
Or see this region's nucleotide sequence