Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08380

Experiment: H2 N-free with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08375 and MMP_RS08380 are separated by 2 nucleotidesMMP_RS08380 and MMP_RS08385 are separated by 163 nucleotides MMP_RS08375: MMP_RS08375 - ATP-binding cassette domain-containing protein, at 1,572,746 to 1,574,395 _RS08375 MMP_RS08380: MMP_RS08380 - phosphatase PAP2 family protein, at 1,574,398 to 1,574,946 _RS08380 MMP_RS08385: MMP_RS08385 - ABC transporter substrate-binding protein, at 1,575,110 to 1,575,832 _RS08385 Position (kb) 1574 1575Strain fitness (log2 ratio) -3 -2 -1 0 1at 1573.472 kb on - strandat 1573.694 kb on + strandat 1573.762 kb on - strandat 1574.399 kb on - strandat 1574.425 kb on + strandat 1574.434 kb on + strandat 1574.509 kb on + strand, within MMP_RS08380at 1574.569 kb on - strand, within MMP_RS08380at 1574.724 kb on + strand, within MMP_RS08380at 1574.749 kb on - strand, within MMP_RS08380at 1574.835 kb on + strand, within MMP_RS08380at 1574.836 kb on - strand, within MMP_RS08380at 1575.011 kb on + strandat 1575.037 kb on + strandat 1575.056 kb on - strandat 1575.163 kb on - strandat 1575.223 kb on - strand, within MMP_RS08385at 1575.272 kb on - strand, within MMP_RS08385at 1575.326 kb on - strand, within MMP_RS08385at 1575.405 kb on - strand, within MMP_RS08385at 1575.556 kb on - strand, within MMP_RS08385at 1575.556 kb on - strand, within MMP_RS08385at 1575.604 kb on - strand, within MMP_RS08385at 1575.622 kb on + strand, within MMP_RS08385at 1575.752 kb on + strand, within MMP_RS08385at 1575.919 kb on - strandat 1575.919 kb on - strandat 1575.931 kb on - strandat 1575.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
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1,573,472 - -1.7
1,573,694 + -3.7
1,573,762 - -1.9
1,574,399 - +1.0
1,574,425 + -0.4
1,574,434 + +0.6
1,574,509 + MMP_RS08380 0.20 +0.4
1,574,569 - MMP_RS08380 0.31 +0.6
1,574,724 + MMP_RS08380 0.59 +0.1
1,574,749 - MMP_RS08380 0.64 -0.2
1,574,835 + MMP_RS08380 0.80 +0.9
1,574,836 - MMP_RS08380 0.80 +0.6
1,575,011 + +1.1
1,575,037 + +0.6
1,575,056 - +0.2
1,575,163 - +0.9
1,575,223 - MMP_RS08385 0.16 +0.2
1,575,272 - MMP_RS08385 0.22 -0.2
1,575,326 - MMP_RS08385 0.30 +0.1
1,575,405 - MMP_RS08385 0.41 +0.1
1,575,556 - MMP_RS08385 0.62 +0.4
1,575,556 - MMP_RS08385 0.62 -0.2
1,575,604 - MMP_RS08385 0.68 -1.0
1,575,622 + MMP_RS08385 0.71 -0.1
1,575,752 + MMP_RS08385 0.89 +0.1
1,575,919 - -0.3
1,575,919 - -0.4
1,575,931 - +0.8
1,575,931 - +1.0

Or see this region's nucleotide sequence