Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07970

Experiment: H2 N-free with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07960 and MMP_RS07965 are separated by 21 nucleotidesMMP_RS07965 and MMP_RS07970 overlap by 4 nucleotidesMMP_RS07970 and MMP_RS07975 are separated by 138 nucleotides MMP_RS07960: MMP_RS07960 - sugar phosphate isomerase/epimerase, at 1,502,975 to 1,503,781 _RS07960 MMP_RS07965: MMP_RS07965 - NADPH-dependent F420 reductase, at 1,503,803 to 1,504,474 _RS07965 MMP_RS07970: MMP_RS07970 - hypothetical protein, at 1,504,471 to 1,504,692 _RS07970 MMP_RS07975: MMP_RS07975 - signal recognition particle protein Srp54, at 1,504,831 to 1,506,183 _RS07975 Position (kb) 1504 1505Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1503.494 kb on + strand, within MMP_RS07960at 1503.680 kb on + strand, within MMP_RS07960at 1503.683 kb on + strand, within MMP_RS07960at 1503.686 kb on - strand, within MMP_RS07960at 1503.686 kb on - strand, within MMP_RS07960at 1503.687 kb on + strand, within MMP_RS07960at 1503.759 kb on + strandat 1504.038 kb on + strandat 1504.092 kb on - strandat 1504.465 kb on + strandat 1504.472 kb on - strandat 1504.548 kb on - strand, within MMP_RS07970at 1504.577 kb on + strand, within MMP_RS07970at 1504.683 kb on - strandat 1504.724 kb on + strandat 1504.755 kb on + strandat 1504.781 kb on + strandat 1504.817 kb on + strandat 1504.817 kb on + strandat 1504.841 kb on - strandat 1504.841 kb on - strandat 1504.842 kb on + strandat 1505.287 kb on - strandat 1505.287 kb on - strandat 1505.341 kb on - strandat 1505.342 kb on + strandat 1505.368 kb on - strandat 1505.437 kb on - strandat 1505.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
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1,503,494 + MMP_RS07960 0.64 +0.3
1,503,680 + MMP_RS07960 0.87 +1.5
1,503,683 + MMP_RS07960 0.88 +0.4
1,503,686 - MMP_RS07960 0.88 +0.3
1,503,686 - MMP_RS07960 0.88 +1.1
1,503,687 + MMP_RS07960 0.88 +0.5
1,503,759 + -0.1
1,504,038 + -1.2
1,504,092 - -2.5
1,504,465 + +1.1
1,504,472 - +0.7
1,504,548 - MMP_RS07970 0.35 +0.5
1,504,577 + MMP_RS07970 0.48 +0.5
1,504,683 - -1.6
1,504,724 + +0.3
1,504,755 + +0.8
1,504,781 + +0.9
1,504,817 + -0.1
1,504,817 + +1.6
1,504,841 - +0.1
1,504,841 - +0.7
1,504,842 + +0.3
1,505,287 - -2.1
1,505,287 - -2.1
1,505,341 - -1.5
1,505,342 + -2.9
1,505,368 - -1.1
1,505,437 - -2.8
1,505,630 + -4.0

Or see this region's nucleotide sequence