Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06325

Experiment: H2 N-free with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06315 and MMP_RS06320 are separated by 22 nucleotidesMMP_RS06320 and MMP_RS06325 are separated by 94 nucleotidesMMP_RS06325 and MMP_RS06330 are separated by 72 nucleotides MMP_RS06315: MMP_RS06315 - cobalt-precorrin-7 (C(5))-methyltransferase, at 1,216,616 to 1,217,242 _RS06315 MMP_RS06320: MMP_RS06320 - hypothetical protein, at 1,217,265 to 1,217,903 _RS06320 MMP_RS06325: MMP_RS06325 - hypothetical protein, at 1,217,998 to 1,218,300 _RS06325 MMP_RS06330: MMP_RS06330 - nucleotidyltransferase domain-containing protein, at 1,218,373 to 1,219,431 _RS06330 Position (kb) 1217 1218 1219Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1216.998 kb on - strand, within MMP_RS06315at 1216.999 kb on + strand, within MMP_RS06315at 1217.233 kb on - strandat 1217.236 kb on + strandat 1217.386 kb on - strand, within MMP_RS06320at 1217.391 kb on + strand, within MMP_RS06320at 1217.396 kb on - strand, within MMP_RS06320at 1217.396 kb on - strand, within MMP_RS06320at 1217.397 kb on + strand, within MMP_RS06320at 1217.401 kb on - strand, within MMP_RS06320at 1217.472 kb on - strand, within MMP_RS06320at 1217.612 kb on - strand, within MMP_RS06320at 1217.826 kb on - strand, within MMP_RS06320at 1217.864 kb on - strandat 1217.901 kb on - strandat 1217.963 kb on - strandat 1217.966 kb on - strandat 1217.992 kb on - strandat 1217.993 kb on + strandat 1218.004 kb on + strandat 1218.005 kb on - strandat 1218.070 kb on + strand, within MMP_RS06325at 1218.313 kb on - strandat 1218.314 kb on + strandat 1218.316 kb on + strandat 1218.316 kb on + strandat 1218.319 kb on - strandat 1218.320 kb on + strandat 1218.320 kb on + strandat 1218.384 kb on - strandat 1218.476 kb on - strandat 1218.536 kb on - strandat 1219.097 kb on - strandat 1219.123 kb on - strandat 1219.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
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1,216,998 - MMP_RS06315 0.61 -2.4
1,216,999 + MMP_RS06315 0.61 -3.8
1,217,233 - -4.0
1,217,236 + -2.5
1,217,386 - MMP_RS06320 0.19 +0.1
1,217,391 + MMP_RS06320 0.20 +1.7
1,217,396 - MMP_RS06320 0.21 -0.4
1,217,396 - MMP_RS06320 0.21 +0.6
1,217,397 + MMP_RS06320 0.21 -1.3
1,217,401 - MMP_RS06320 0.21 +0.3
1,217,472 - MMP_RS06320 0.32 +0.4
1,217,612 - MMP_RS06320 0.54 +1.0
1,217,826 - MMP_RS06320 0.88 +0.3
1,217,864 - +0.9
1,217,901 - +1.3
1,217,963 - -1.6
1,217,966 - +0.3
1,217,992 - -1.6
1,217,993 + +0.4
1,218,004 + +0.8
1,218,005 - -2.4
1,218,070 + MMP_RS06325 0.24 +0.7
1,218,313 - +0.1
1,218,314 + -0.6
1,218,316 + +0.5
1,218,316 + -0.5
1,218,319 - -0.7
1,218,320 + +0.1
1,218,320 + +0.1
1,218,384 - -4.0
1,218,476 - -2.8
1,218,536 - -3.9
1,219,097 - -6.1
1,219,123 - -4.4
1,219,291 - -3.7

Or see this region's nucleotide sequence