Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05090

Experiment: H2 N-free with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05080 and MMP_RS05085 are separated by 14 nucleotidesMMP_RS05085 and MMP_RS05090 are separated by 10 nucleotidesMMP_RS05090 and MMP_RS05095 are separated by 11 nucleotidesMMP_RS05095 and MMP_RS05100 are separated by 9 nucleotides MMP_RS05080: MMP_RS05080 - acetyl-CoA decarbonylase/synthase complex subunit delta, at 966,196 to 967,350 _RS05080 MMP_RS05085: MMP_RS05085 - AAA family ATPase, at 967,365 to 968,117 _RS05085 MMP_RS05090: MMP_RS05090 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta, at 968,128 to 969,501 _RS05090 MMP_RS05095: MMP_RS05095 - CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon, at 969,513 to 970,031 _RS05095 MMP_RS05100: MMP_RS05100 - CO dehydrogenase/acetyl-CoA synthase complex subunit alpha, at 970,041 to 972,383 _RS05100 Position (kb) 968 969 970Strain fitness (log2 ratio) -1 0 1at 967.467 kb on + strand, within MMP_RS05085at 967.483 kb on + strand, within MMP_RS05085at 967.570 kb on - strand, within MMP_RS05085at 967.732 kb on + strand, within MMP_RS05085at 967.741 kb on - strand, within MMP_RS05085at 967.742 kb on + strand, within MMP_RS05085at 967.781 kb on - strand, within MMP_RS05085at 967.795 kb on - strand, within MMP_RS05085at 967.853 kb on - strand, within MMP_RS05085at 967.871 kb on - strand, within MMP_RS05085at 967.892 kb on - strand, within MMP_RS05085at 967.910 kb on - strand, within MMP_RS05085at 967.911 kb on + strand, within MMP_RS05085at 968.129 kb on - strandat 968.130 kb on + strandat 968.297 kb on + strand, within MMP_RS05090at 968.482 kb on - strand, within MMP_RS05090at 968.710 kb on - strand, within MMP_RS05090at 968.901 kb on - strand, within MMP_RS05090at 968.950 kb on - strand, within MMP_RS05090at 968.951 kb on + strand, within MMP_RS05090at 968.986 kb on + strand, within MMP_RS05090at 969.055 kb on - strand, within MMP_RS05090at 969.055 kb on - strand, within MMP_RS05090at 969.056 kb on + strand, within MMP_RS05090at 969.130 kb on - strand, within MMP_RS05090at 969.215 kb on - strand, within MMP_RS05090at 969.220 kb on + strand, within MMP_RS05090at 969.247 kb on - strand, within MMP_RS05090at 969.487 kb on - strandat 969.606 kb on - strand, within MMP_RS05095at 969.607 kb on + strand, within MMP_RS05095at 969.674 kb on + strand, within MMP_RS05095at 969.674 kb on + strand, within MMP_RS05095at 969.674 kb on + strand, within MMP_RS05095at 969.694 kb on + strand, within MMP_RS05095at 969.812 kb on + strand, within MMP_RS05095at 970.159 kb on + strandat 970.171 kb on + strandat 970.182 kb on - strandat 970.212 kb on - strandat 970.212 kb on - strandat 970.212 kb on - strandat 970.213 kb on + strandat 970.213 kb on + strandat 970.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
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967,467 + MMP_RS05085 0.14 +0.4
967,483 + MMP_RS05085 0.16 +0.7
967,570 - MMP_RS05085 0.27 +0.4
967,732 + MMP_RS05085 0.49 -0.4
967,741 - MMP_RS05085 0.50 +1.2
967,742 + MMP_RS05085 0.50 +0.3
967,781 - MMP_RS05085 0.55 -1.5
967,795 - MMP_RS05085 0.57 -0.5
967,853 - MMP_RS05085 0.65 +0.8
967,871 - MMP_RS05085 0.67 +0.7
967,892 - MMP_RS05085 0.70 +0.3
967,910 - MMP_RS05085 0.72 -0.7
967,911 + MMP_RS05085 0.73 +0.0
968,129 - -1.0
968,130 + +0.1
968,297 + MMP_RS05090 0.12 +0.0
968,482 - MMP_RS05090 0.26 +0.7
968,710 - MMP_RS05090 0.42 +1.5
968,901 - MMP_RS05090 0.56 -0.7
968,950 - MMP_RS05090 0.60 -0.1
968,951 + MMP_RS05090 0.60 +0.2
968,986 + MMP_RS05090 0.62 -0.3
969,055 - MMP_RS05090 0.67 +1.5
969,055 - MMP_RS05090 0.67 +0.7
969,056 + MMP_RS05090 0.68 +0.5
969,130 - MMP_RS05090 0.73 +0.4
969,215 - MMP_RS05090 0.79 +1.0
969,220 + MMP_RS05090 0.79 +0.8
969,247 - MMP_RS05090 0.81 +0.1
969,487 - +1.4
969,606 - MMP_RS05095 0.18 +0.9
969,607 + MMP_RS05095 0.18 +0.3
969,674 + MMP_RS05095 0.31 +0.4
969,674 + MMP_RS05095 0.31 -0.7
969,674 + MMP_RS05095 0.31 +0.8
969,694 + MMP_RS05095 0.35 -0.2
969,812 + MMP_RS05095 0.58 -0.6
970,159 + -0.3
970,171 + +0.6
970,182 - +0.8
970,212 - -0.0
970,212 - +0.7
970,212 - +0.0
970,213 + -0.3
970,213 + +1.4
970,216 - -0.5

Or see this region's nucleotide sequence