Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03480

Experiment: H2 N-free with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03470 and MMP_RS03475 overlap by 4 nucleotidesMMP_RS03475 and MMP_RS03480 are separated by 49 nucleotidesMMP_RS03480 and MMP_RS03485 are separated by 27 nucleotidesMMP_RS03485 and MMP_RS03490 are separated by 43 nucleotides MMP_RS03470: MMP_RS03470 - phosphoadenosine phosphosulfate reductase family protein, at 651,185 to 652,060 _RS03470 MMP_RS03475: MMP_RS03475 - hypothetical protein, at 652,057 to 652,287 _RS03475 MMP_RS03480: MMP_RS03480 - SulP family inorganic anion transporter, at 652,337 to 653,956 _RS03480 MMP_RS03485: MMP_RS03485 - TIGR00267 family protein, at 653,984 to 654,544 _RS03485 MMP_RS03490: MMP_RS03490 - DUF2115 domain-containing protein, at 654,588 to 655,076 _RS03490 Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1at 651.511 kb on - strand, within MMP_RS03470at 651.559 kb on + strand, within MMP_RS03470at 651.751 kb on - strand, within MMP_RS03470at 651.752 kb on + strand, within MMP_RS03470at 651.752 kb on + strand, within MMP_RS03470at 651.752 kb on + strand, within MMP_RS03470at 651.752 kb on + strand, within MMP_RS03470at 651.780 kb on - strand, within MMP_RS03470at 651.793 kb on - strand, within MMP_RS03470at 651.793 kb on - strand, within MMP_RS03470at 651.797 kb on - strand, within MMP_RS03470at 651.804 kb on - strand, within MMP_RS03470at 651.941 kb on + strand, within MMP_RS03470at 652.137 kb on + strand, within MMP_RS03475at 652.266 kb on - strandat 652.271 kb on - strandat 652.387 kb on + strandat 652.531 kb on - strand, within MMP_RS03480at 652.531 kb on - strand, within MMP_RS03480at 652.532 kb on + strand, within MMP_RS03480at 652.578 kb on - strand, within MMP_RS03480at 652.588 kb on - strand, within MMP_RS03480at 652.922 kb on + strand, within MMP_RS03480at 652.963 kb on + strand, within MMP_RS03480at 653.107 kb on - strand, within MMP_RS03480at 653.219 kb on + strand, within MMP_RS03480at 653.219 kb on + strand, within MMP_RS03480at 653.362 kb on + strand, within MMP_RS03480at 653.364 kb on - strand, within MMP_RS03480at 653.365 kb on + strand, within MMP_RS03480at 653.378 kb on + strand, within MMP_RS03480at 653.382 kb on - strand, within MMP_RS03480at 653.448 kb on - strand, within MMP_RS03480at 653.470 kb on - strand, within MMP_RS03480at 653.512 kb on + strand, within MMP_RS03480at 653.623 kb on + strand, within MMP_RS03480at 653.660 kb on - strand, within MMP_RS03480at 653.660 kb on - strand, within MMP_RS03480at 653.749 kb on + strand, within MMP_RS03480at 653.899 kb on + strandat 654.035 kb on - strandat 654.164 kb on + strand, within MMP_RS03485at 654.296 kb on - strand, within MMP_RS03485at 654.296 kb on - strand, within MMP_RS03485at 654.297 kb on + strand, within MMP_RS03485at 654.340 kb on + strand, within MMP_RS03485at 654.546 kb on - strandat 654.546 kb on - strandat 654.546 kb on - strandat 654.554 kb on + strandat 654.557 kb on - strandat 654.557 kb on - strandat 654.557 kb on - strandat 654.558 kb on + strandat 654.611 kb on - strandat 654.947 kb on - strand, within MMP_RS03490

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
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651,511 - MMP_RS03470 0.37 -1.0
651,559 + MMP_RS03470 0.43 +0.1
651,751 - MMP_RS03470 0.65 +1.5
651,752 + MMP_RS03470 0.65 +0.4
651,752 + MMP_RS03470 0.65 +0.1
651,752 + MMP_RS03470 0.65 -0.7
651,752 + MMP_RS03470 0.65 -0.1
651,780 - MMP_RS03470 0.68 -0.5
651,793 - MMP_RS03470 0.69 +0.0
651,793 - MMP_RS03470 0.69 +1.0
651,797 - MMP_RS03470 0.70 +0.1
651,804 - MMP_RS03470 0.71 +0.3
651,941 + MMP_RS03470 0.86 -0.5
652,137 + MMP_RS03475 0.35 -1.7
652,266 - +0.3
652,271 - +1.0
652,387 + +0.5
652,531 - MMP_RS03480 0.12 +0.6
652,531 - MMP_RS03480 0.12 -0.1
652,532 + MMP_RS03480 0.12 -0.7
652,578 - MMP_RS03480 0.15 +0.6
652,588 - MMP_RS03480 0.15 +0.8
652,922 + MMP_RS03480 0.36 +0.4
652,963 + MMP_RS03480 0.39 +0.6
653,107 - MMP_RS03480 0.48 +0.2
653,219 + MMP_RS03480 0.54 +0.6
653,219 + MMP_RS03480 0.54 +0.6
653,362 + MMP_RS03480 0.63 +0.2
653,364 - MMP_RS03480 0.63 +0.3
653,365 + MMP_RS03480 0.63 +0.9
653,378 + MMP_RS03480 0.64 +1.1
653,382 - MMP_RS03480 0.65 +0.4
653,448 - MMP_RS03480 0.69 +0.3
653,470 - MMP_RS03480 0.70 -0.3
653,512 + MMP_RS03480 0.73 +0.0
653,623 + MMP_RS03480 0.79 +0.6
653,660 - MMP_RS03480 0.82 +0.7
653,660 - MMP_RS03480 0.82 +0.8
653,749 + MMP_RS03480 0.87 +0.2
653,899 + +0.5
654,035 - -0.5
654,164 + MMP_RS03485 0.32 -2.0
654,296 - MMP_RS03485 0.56 -0.4
654,296 - MMP_RS03485 0.56 -0.8
654,297 + MMP_RS03485 0.56 -2.5
654,340 + MMP_RS03485 0.63 -1.2
654,546 - -0.1
654,546 - -1.0
654,546 - -0.1
654,554 + -0.4
654,557 - -0.1
654,557 - -1.8
654,557 - -0.7
654,558 + +0.7
654,611 - -1.8
654,947 - MMP_RS03490 0.73 +0.3

Or see this region's nucleotide sequence